View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9985_low_11 (Length: 334)
Name: NF9985_low_11
Description: NF9985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 40986514 - 40986837
Alignment:
| Q |
1 |
cattcaaataagtttttgtactcactgttactaggtcacgtgcggatggagcaacctttttgtgtataacaaaagacaaaatgtttagaaataaacataa |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
40986514 |
cattcaaataagtttttgcactcactgttactaggtcacctgcggatggagcaacctttttgtgcataacaaaagacaaaatgtttagaaataaacacaa |
40986613 |
T |
|
| Q |
101 |
taacaaatatcaatgtaaaattaatctataatcacaaattggatgtcaactaaatgaataaaagtgtacctggagtagatagctgcaaactgttagaatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
40986614 |
taacaaatatcaatgtaaaattaatctataatcacaaattggatgtcaactaaatgaataaaattgtacctggagtagatagctgcaaactgttagaatc |
40986713 |
T |
|
| Q |
201 |
ttagcatctttgaaatcaatcagtatttgacatagtccattggcatgaagtttatagaattttggttctgtggaaaaaccaatgtctacctcttctataa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40986714 |
ttagcatctttgaaatcaatcagtatttgacatagtccattggcatgaagtttataaaattttggttctgtggaaaaaccaatgtctacctattctataa |
40986813 |
T |
|
| Q |
301 |
catttggacttacacatatctctg |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
40986814 |
catttggacttacacatatctctg |
40986837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 40994498 - 40994544
Alignment:
| Q |
159 |
taaaagtgtacctggagtagatagctgcaaactgttagaatcttagc |
205 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40994498 |
taaaagagtacctggagtagataactgcaaactgttagaatcttagc |
40994544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University