View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9985_low_13 (Length: 323)

Name: NF9985_low_13
Description: NF9985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9985_low_13
NF9985_low_13
[»] chr3 (3 HSPs)
chr3 (19-316)||(15513433-15513731)
chr3 (239-281)||(15514277-15514319)
chr3 (32-117)||(12767337-12767422)
[»] chr5 (4 HSPs)
chr5 (19-89)||(9962954-9963024)
chr5 (19-90)||(18398599-18398670)
chr5 (19-113)||(31536419-31536513)
chr5 (32-117)||(36289589-36289674)
[»] chr2 (7 HSPs)
chr2 (19-117)||(12670743-12670841)
chr2 (32-116)||(10633364-10633448)
chr2 (19-134)||(30481661-30481776)
chr2 (18-73)||(34557292-34557347)
chr2 (19-73)||(33710553-33710607)
chr2 (48-117)||(4422823-4422892)
chr2 (61-117)||(21488865-21488921)
[»] chr8 (6 HSPs)
chr8 (37-90)||(9030583-9030636)
chr8 (19-75)||(37616265-37616321)
chr8 (19-120)||(8238727-8238828)
chr8 (32-73)||(10340283-10340324)
chr8 (34-90)||(10340211-10340267)
chr8 (60-88)||(36203407-36203435)
[»] chr7 (5 HSPs)
chr7 (60-115)||(11329505-11329560)
chr7 (38-133)||(25690712-25690807)
chr7 (19-117)||(16780773-16780871)
chr7 (19-90)||(41195668-41195739)
chr7 (22-90)||(30357895-30357963)
[»] chr4 (5 HSPs)
chr4 (19-134)||(40423307-40423422)
chr4 (26-73)||(43115575-43115622)
chr4 (19-68)||(53449054-53449103)
chr4 (60-118)||(25844267-25844325)
chr4 (42-90)||(40421951-40421999)
[»] chr1 (3 HSPs)
chr1 (19-72)||(39126966-39127019)
chr1 (19-73)||(25485009-25485063)
chr1 (19-95)||(34062624-34062700)
[»] scaffold0110 (1 HSPs)
scaffold0110 (19-75)||(31363-31419)
[»] chr6 (1 HSPs)
chr6 (19-73)||(33617713-33617767)


Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 316
Target Start/End: Original strand, 15513433 - 15513731
Alignment:
Q  19 aactcacgttcgacatttttcaacgtgaattaactcacaccgacacttttaagattgactcaatcacttttttagtcactttaaccgatcttaaaagtgc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15513433 aactcacgttcgacatttttcaacgtgaattaactcacaccgacacttttaagattgactcaatcacttttttagtcactttaaccgatcttaaaagtgc 15513532  T
Q  119 tagcatgaattaacttattgtnnnnnnnnnn-tgccgaacatgagttaaatcacattaaattaaggaaatgagtaattctcaaaggaagaagaacaataa 217  Q
    ||||||||||||||||||| |           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15513533 tagcatgaattaacttattataaaaaaaaaaatgccgaacgtgagttaaatcacattaaattaaggaaatgagtaattctcaaaggaagaagaacaataa 15513632  T
Q  218 tctttcccttgttttatttttgtaagggtctactattatgtttgtatcacaacctaggttgatggaaatggaaagggcatttcaatggacctcatgtca 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15513633 tctttcccttgttttatttttgtaagggtctactattatgtttgtatcacaacctaggttgatggaaatggaaagggcatttcaatggacctcatgtca 15513731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 15514277 - 15514319
Alignment:
Q  239 gtaagggtctactattatgtttgtatcacaacctaggttgatg 281  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  15514277 gtaagggtctactattatgtttgtatcgcaacctaggttgatg 15514319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 117
Target Start/End: Complemental strand, 12767422 - 12767337
Alignment:
Q  32 catttttcaacgtgaattaactcacaccgacacttttaagattgactcaatcacttttttagtcactttaaccgatcttaaaagtg 117  Q
    ||||||||||| ||| ||||||||| |  ||||||||||||| |  ||||||||||||| ||||   | ||||||||||| |||||    
T  12767422 catttttcaacttgagttaactcacgctaacacttttaagatcgtttcaatcactttttaagtcggatcaaccgatcttagaagtg 12767337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 9963024 - 9962954
Alignment:
Q  19 aactcacgttcgacatttttcaacgtgaattaactcacaccgacacttttaagattgactcaatcactttt 89  Q
    |||| ||||||| ||||||||| ||| | ||||||||||  ||||||||||||||||| ||||||||||||    
T  9963024 aacttacgttcggcatttttcagcgtaagttaactcacaatgacacttttaagattgattcaatcactttt 9962954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 18398670 - 18398599
Alignment:
Q  19 aactcacgttcgacatttttcaacgtgaattaactcacaccgacacttttaagattgactcaatcacttttt 90  Q
    |||||||| |||| |||||||||||||| |||||| |||| |||||||||||||| |  ||| |||||||||    
T  18398670 aactcacgctcgatatttttcaacgtgagttaacttacactgacacttttaagatcggttcattcacttttt 18398599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 31536513 - 31536419
Alignment:
Q  19 aactcacgttcgacatttttcaacgtgaattaactcacaccgacacttttaagattgactcaatcacttttttagtcactttaaccgatcttaaa 113  Q
    ||||||||||| |||||||| |||| || ||||||||||| || | ||||||||| |  ||||| | ||||| ||||  |||||| |||||||||    
T  31536513 aactcacgttcaacattttttaacgagagttaactcacactgatatttttaagatcggttcaataattttttaagtcggtttaactgatcttaaa 31536419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 36289589 - 36289674
Alignment:
Q  32 catttttcaacgtgaattaactcacaccgacacttttaagattgactcaatcacttttttagtcactttaaccgatcttaaaagtg 117  Q
    ||||||||| ||||| |||  |||||  |||||||||||||| || | ||||||||||| ||||| |||||   ||||||||||||    
T  36289589 catttttcagcgtgagttagttcacattgacacttttaagatcgatttaatcactttttaagtcagtttaatgaatcttaaaagtg 36289674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 12670743 - 12670841
Alignment:
Q  19 aactcacgttcgacatttttcaacgtgaattaactcacaccgacacttttaagattgactcaatcacttttttagtcactttaaccgatcttaaaagtg 117  Q
    ||||||| ||||||||||| |||||||| ||||||||| | |||||||||||||| |  ||||||| ||||| || |   | |||||||||||||||||    
T  12670743 aactcacattcgacattttgcaacgtgacttaactcacgctgacacttttaagatcggttcaatcaatttttaagccgactcaaccgatcttaaaagtg 12670841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 10633364 - 10633448
Alignment:
Q  32 catttttcaacgtgaattaactcacaccgacacttttaagattgactcaatcacttttttagtcactttaaccgatcttaaaagt 116  Q
    ||||||||||||||| ||||||||||  ||  |||| | |||||| ||||||| ||||| ||||  || ||||||||||||||||    
T  10633364 catttttcaacgtgagttaactcacagtgatcctttgaggattgattcaatcaatttttaagtcgtttcaaccgatcttaaaagt 10633448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 30481661 - 30481776
Alignment:
Q  19 aactcacgttcgacatttttcaacgtgaattaactcacaccgacacttttaagattgactcaatcacttttttagtcactttaaccgatcttaaaagtgc 118  Q
    |||||| ||||||||||||| | ||||| ||||||||||| | ||||||||||||    ||||| | ||||| || || || |||| ||||||||||| |    
T  30481661 aactcatgttcgacattttttagcgtgagttaactcacactggcacttttaagatcagttcaataattttttaagccaattcaacctatcttaaaagttc 30481760  T
Q  119 tagcatgaattaactt 134  Q
    |||  | |||||||||    
T  30481761 tagtgtaaattaactt 30481776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 34557292 - 34557347
Alignment:
Q  18 aaactcacgttcgacatttttcaacgtgaattaactcacaccgacacttttaagat 73  Q
    |||||| || ||||||||||||| ||||| ||||||||||||  ||||||||||||    
T  34557292 aaactctcgctcgacatttttcagcgtgagttaactcacaccagcacttttaagat 34557347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 33710553 - 33710607
Alignment:
Q  19 aactcacgttcgacatttttcaacgtgaattaactcacaccgacacttttaagat 73  Q
    |||| ||||||||||||||||| ||||| |||||| || | ||||||||||||||    
T  33710553 aacttacgttcgacatttttcagcgtgagttaacttacgctgacacttttaagat 33710607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 4422892 - 4422823
Alignment:
Q  48 ttaactcacaccgacacttttaagattgactcaatcacttttttagtcactttaaccgatcttaaaagtg 117  Q
    ||||||||| ||| ||||||| |||| | |||||||||||||| ||||   | |||||||||||||||||    
T  4422892 ttaactcacgccgtcactttttagatcggctcaatcactttttaagtcgaatcaaccgatcttaaaagtg 4422823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 21488865 - 21488921
Alignment:
Q  61 acacttttaagattgactcaatcacttttttagtcactttaaccgatcttaaaagtg 117  Q
    ||||||||||||| |  ||||||| ||||| ||||| || |||||||||||||||||    
T  21488865 acacttttaagatcggttcaatcattttttaagtcagttcaaccgatcttaaaagtg 21488921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 9030583 - 9030636
Alignment:
Q  37 ttcaacgtgaattaactcacaccgacacttttaagattgactcaatcacttttt 90  Q
    |||| ||||| |||||||||||||||||||||||||| || |||||||||||||    
T  9030583 ttcagcgtgagttaactcacaccgacacttttaagatcgattcaatcacttttt 9030636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 37616265 - 37616321
Alignment:
Q  19 aactcacgttcgacatttttcaacgtgaattaactcacaccgacacttttaagattg 75  Q
    |||||||||||||||||||||| ||||  ||||||||| | ||||||||||||||||    
T  37616265 aactcacgttcgacatttttcagcgtgggttaactcacgctgacacttttaagattg 37616321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 8238727 - 8238828
Alignment:
Q  19 aactcacgttcgacatttttcaacgtgaattaactcacaccgacacttttaagattgactcaatcacttttttagtcactttaaccgatcttaaaagtgc 118  Q
    |||||||| |||| |||||||| ||  | ||||||||| | ||||||||| ||||    ||||||||||||||||||   | ||||||||||||||||||    
T  8238727 aactcacgctcgatatttttcagcggtagttaactcacgctgacactttttagatcagttcaatcacttttttagtcggatcaaccgatcttaaaagtgc 8238826  T
Q  119 ta 120  Q
    ||    
T  8238827 ta 8238828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 10340324 - 10340283
Alignment:
Q  32 catttttcaacgtgaattaactcacaccgacacttttaagat 73  Q
    ||||||||||||||| ||||||||| | ||||||||||||||    
T  10340324 catttttcaacgtgagttaactcacgctgacacttttaagat 10340283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 10340211 - 10340267
Alignment:
Q  34 tttttcaacgtgaattaactcacaccgacacttttaagattgactcaatcacttttt 90  Q
    ||||||| ||||| ||||||||||| ||||||||| |||| || ||||||| |||||    
T  10340211 tttttcagcgtgagttaactcacactgacactttttagatcgattcaatcatttttt 10340267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 88
Target Start/End: Complemental strand, 36203435 - 36203407
Alignment:
Q  60 gacacttttaagattgactcaatcacttt 88  Q
    |||||||||||||||||||||||||||||    
T  36203435 gacacttttaagattgactcaatcacttt 36203407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 11329505 - 11329560
Alignment:
Q  60 gacacttttaagattgactcaatcacttttttagtcactttaaccgatcttaaaag 115  Q
    ||||||||||||||||| || |||||||||| ||||  ||||||||||||||||||    
T  11329505 gacacttttaagattgattcgatcactttttaagtcggtttaaccgatcttaaaag 11329560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 25690712 - 25690807
Alignment:
Q  38 tcaacgtgaattaactcacaccgacacttttaagattgactcaatcacttttttagtcactttaaccgatcttaaaagtgctagcatgaattaact 133  Q
    ||||| ||| ||||||||| | ||||||||| |||| |  ||||||||||||| || |  || |||||||||||||||||  ||||||||||||||    
T  25690712 tcaacatgagttaactcacgctgacactttttagatcggttcaatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattaact 25690807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 16780871 - 16780773
Alignment:
Q  19 aactcacgttcgacatttttcaacgtgaattaactcacaccgacacttttaagattgactcaatcacttttttagtcactttaaccgatcttaaaagtg 117  Q
    |||||| | ||||||||||||| | ||| |||||| || | | |||||||||||| |  ||||||||||||| ||||  || |||||||||||||||||    
T  16780871 aactcatgctcgacatttttcagcatgagttaacttacgcgggcacttttaagatcggttcaatcactttttaagtcgattcaaccgatcttaaaagtg 16780773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 41195668 - 41195739
Alignment:
Q  19 aactcacgttcgacatttttcaacgtgaattaactcacaccgacacttttaagattgactcaatcacttttt 90  Q
    |||||||| ||| ||||||| | ||| | ||||||||| | |||||||||||| |||| |||||||||||||    
T  41195668 aactcacgctcggcattttttagcgttagttaactcacgctgacacttttaaggttgattcaatcacttttt 41195739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 30357963 - 30357895
Alignment:
Q  22 tcacgttcgacatttttcaacgtgaattaactcacaccgacacttttaagattgactcaatcacttttt 90  Q
    ||||||||| ||||||||| ||  |  ||| |||||||||||||||| ||||||| ||| |||||||||    
T  30357963 tcacgttcggcatttttcatcggtagctaattcacaccgacactttttagattgattcactcacttttt 30357895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 40423422 - 40423307
Alignment:
Q  19 aactcacgttcgacatttttcaacgtgaattaactcacaccgacacttttaagattgactcaatcacttttttagtcactttaaccgatcttaaaagtgc 118  Q
    |||||||| ||  ||||||| | ||||||||||||||| | |||| ||||||||| |  ||||||||||||| ||||  || |||  ||||||||||||     
T  40423422 aactcacgctcagcatttttaagcgtgaattaactcacgctgacaattttaagatcggttcaatcactttttaagtcggttcaacaaatcttaaaagtgt 40423323  T
Q  119 tagcatgaattaactt 134  Q
     ||||||| |||||||    
T  40423322 cagcatgagttaactt 40423307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 43115575 - 43115622
Alignment:
Q  26 gttcgacatttttcaacgtgaattaactcacaccgacacttttaagat 73  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||||    
T  43115575 gttcgacatttttcagcgtgagttaactcacactgacacttttaagat 43115622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 53449054 - 53449103
Alignment:
Q  19 aactcacgttcgacatttttcaacgtgaattaactcacaccgacactttt 68  Q
    ||||||| ||||||||||||||| |||| ||||||||| |||||||||||    
T  53449054 aactcacattcgacatttttcaatgtgagttaactcacgccgacactttt 53449103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 25844325 - 25844267
Alignment:
Q  60 gacacttttaagattgactcaatcacttttttagtcactttaaccgatcttaaaagtgc 118  Q
    ||||||||||||||||| |||||| |||||| || |  || ||||||||||||||||||    
T  25844325 gacacttttaagattgattcaatcgctttttaagccggttcaaccgatcttaaaagtgc 25844267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 40421999 - 40421951
Alignment:
Q  42 cgtgaattaactcacaccgacacttttaagattgactcaatcacttttt 90  Q
    ||||| ||||||||||| |||||||||||||||   |||||||||||||    
T  40421999 cgtgagttaactcacactgacacttttaagattagttcaatcacttttt 40421951  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 39127019 - 39126966
Alignment:
Q  19 aactcacgttcgacatttttcaacgtgaattaactcacaccgacacttttaaga 72  Q
    |||||||| ||||||||||||| ||||| ||||||||| | |||||||||||||    
T  39127019 aactcacgctcgacatttttcagcgtgagttaactcacgctgacacttttaaga 39126966  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 25485063 - 25485009
Alignment:
Q  19 aactcacgttcgacatttttcaacgtgaattaactcacaccgacacttttaagat 73  Q
    ||||||||||||||||||| || ||||| ||||||||| | | ||||||||||||    
T  25485063 aactcacgttcgacattttccagcgtgagttaactcacgctgccacttttaagat 25485009  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 34062624 - 34062700
Alignment:
Q  19 aactcacgttcgacatttttcaacgtgaattaactcacaccgacacttttaagattgactcaatcacttttttagtc 95  Q
    |||||||| || |||||||||| ||||| | ||||||| | ||||||||||| || |  ||||||||||||| ||||    
T  34062624 aactcacgctcaacatttttcagcgtgagtgaactcacgctgacacttttaaaatcggttcaatcactttttaagtc 34062700  T

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Target: scaffold0110 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 31363 - 31419
Alignment:
Q  19 aactcacgttcgacatttttcaacgtgaattaactcacaccgacacttttaagattg 75  Q
    |||||||||||| ||||||||| ||||| |||||||||||  ||| |||||||||||    
T  31363 aactcacgttcggcatttttcagcgtgagttaactcacacatacatttttaagattg 31419  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 33617767 - 33617713
Alignment:
Q  19 aactcacgttcgacatttttcaacgtgaattaactcacaccgacacttttaagat 73  Q
    |||||||  |||||||||||||||||||||||||| | | ||| |||||||||||    
T  33617767 aactcacactcgacatttttcaacgtgaattaactgatagcgatacttttaagat 33617713  T

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