View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985_low_14 (Length: 312)
Name: NF9985_low_14
Description: NF9985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 38145217 - 38145497
Alignment:
| Q |
16 |
atttcatacaacaatttacactccaaatgaaccttcattcgcaaccatccttgattccttagcaatgaacctaaggtgtttggcaccatctacaccgaaa |
115 |
Q |
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| T |
38145217 |
atttcatacaacaatttacactccaaatgaaccttcattcgcaaccatccttgattccttagcaatgaacctaaggtgtttggcaccatctacaccgaaa |
38145316 |
T |
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| Q |
116 |
cccgaattcatattcacaccctcccaagattcccatgtccaagcagccgtaatttgctccaagaaacttggaatccatctaagagtaagaagtggtggcc |
215 |
Q |
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| T |
38145317 |
cccgaattcatattcacaccctcccaagattcccatgtccaagcagccgtaatttgctccaagaaacttggaatccatctaagagtaagaagtggtggcc |
38145416 |
T |
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| Q |
216 |
atgactatgaaggactttcatatgtttccaaaatcgaaacacctttcatagttgtcgatttaatcaaacttcgcgacataa |
296 |
Q |
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| T |
38145417 |
atgactatgaaggactttcatatgtttccaaaatcgaaacacctttcatagttgtcgatttaatcaaacttcgcggcataa |
38145497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 86 - 291
Target Start/End: Complemental strand, 11787533 - 11787328
Alignment:
| Q |
86 |
ctaaggtgtttggcaccatctacaccgaaacccgaattcatattcacaccctcccaagattcccatgtccaagcagccgtaatttgctccaagaaacttg |
185 |
Q |
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| T |
11787533 |
ctaaggtatttggtaccttctgctccaaaacccgaattcatattcacacccttaaccgattcacatgtccaagtagctgttacttgttcaaagaaacttg |
11787434 |
T |
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| Q |
186 |
gaatccatctaagagtaagaagtggtggccatgactatgaaggactttcatatgtttccaaaatcgaaacacctttcatagttgtcgatttaatcaaact |
285 |
Q |
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| T |
11787433 |
gtattcatctaagagtaagaagtggtggccatgattatgaaggactctcatatgtttccgaaatcgaaacgcctttcataatcgtcgacctagccaaact |
11787334 |
T |
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| Q |
286 |
tcgcga |
291 |
Q |
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|||||| |
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| T |
11787333 |
tcgcga |
11787328 |
T |
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