View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985_low_16 (Length: 302)
Name: NF9985_low_16
Description: NF9985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 27959420 - 27959137
Alignment:
| Q |
1 |
aagggtccaacaacaaaacttggtacaagtgtcacaatatccaacccatgttgttctccaaattctagaacagctttctcagctagggttttagaaacag |
100 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27959420 |
aagggtccaacaacaaaacttggtacaagagttacaatatccaaaccatgttgttctccaaattcaagaacagctttctcagctagggttttagaaacag |
27959321 |
T |
|
| Q |
101 |
catatgaccaagcaaaaggcttcaaatttctaagaatattcacatcactccaataactttcatccattacatcttcttctttgtcttgcatatacacagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27959320 |
catatgaccaagcaaaaggcttcaaatttctaagaatattcacatcactccaataactttcatccattacatcttcttctttgtcttgcatatacacagc |
27959221 |
T |
|
| Q |
201 |
agaagcacttgaagtgtaaataactcttttcactgtctttgaatttttgcatgcttttagaattcctaatgctccatcaatggt |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27959220 |
agaagcacttgaagtgtaaataactcttttcactgtctttgaatttttgcatgcttttagaattcctaatgctccatcaatggt |
27959137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 284
Target Start/End: Complemental strand, 27985725 - 27985445
Alignment:
| Q |
4 |
ggtccaacaacaaaacttggtacaagtgtcacaatatccaacccatgttgttctccaaattctagaacagctttctcagctagggttttagaaacagcat |
103 |
Q |
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||||||||||||||| | |||| ||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27985725 |
ggtccaacaacaaaagtgggtagaagagtcacaatatccaaaccatgttgttctccaaattcaagaacagctttctcagctagggttttagaaacagcat |
27985626 |
T |
|
| Q |
104 |
atgaccaagcaaaaggcttcaaatttctaagaatattcacatcactccaataactttcatccattacatcttcttctttgtcttgcatatacacagcaga |
203 |
Q |
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|||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||| |||||| |||||||||| |
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| T |
27985625 |
atgaccaagcaaaaggtttcaaagttctaagattattcacatcactccaataactttcatccattacctctacttctttgttttgcatgcacacagcaga |
27985526 |
T |
|
| Q |
204 |
agcacttgaagtgtaaataactcttttcactgtctttgaatttttgcatgcttttagaattcctaatgctccatcaatggt |
284 |
Q |
| |
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||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27985525 |
agcacttgaggtgtaaacaactcttttcactgtctttgaatttttgcatgcttttagaattcctaatgccccatcaatggt |
27985445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 284
Target Start/End: Complemental strand, 27994907 - 27994627
Alignment:
| Q |
4 |
ggtccaacaacaaaacttggtacaagtgtcacaatatccaacccatgttgttctccaaattctagaacagctttctcagctagggttttagaaacagcat |
103 |
Q |
| |
|
||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| ||| |
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| T |
27994907 |
ggtcctacaacaaaaggtggtacaagagtcacaatatccaacccatgttgttctccaaattcaagaacagctttctcagctagtgtcttagaaacaccat |
27994808 |
T |
|
| Q |
104 |
atgaccaagcaaaaggcttcaaatttctaagaatattcacatcactccaataactttcatccattacatcttcttctttgtcttgcatatacacagcaga |
203 |
Q |
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|
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||| |
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| T |
27994807 |
atgaccaagcaaatggcttcaaagttctaagaatattcacatcactccaataactttcatccattgtatcttcttctttatcttgcgtatacacagcaga |
27994708 |
T |
|
| Q |
204 |
agcacttgaagtgtaaataactcttttcactgtctttgaatttttgcatgcttttagaattcctaatgctccatcaatggt |
284 |
Q |
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|||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27994707 |
agcactagaggtgtaaataactcttttcaatgtctttgaatttttgcatgcttttagaattcctaatgctccatcaatggt |
27994627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 4 - 281
Target Start/End: Complemental strand, 28013585 - 28013308
Alignment:
| Q |
4 |
ggtccaacaacaaaacttggtacaagtgtcacaatatccaacccatgttgttctccaaattctagaacagctttctcagctagggttttagaaacagcat |
103 |
Q |
| |
|
||||||| ||||||| |||||| | ||||||| ||| || |||||||||||||||||||| |||||||||||||| || | |||||||||| | || |
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| T |
28013585 |
ggtccaagaacaaaagttggtattatagtcacaacatctaaaccatgttgttctccaaattcaagaacagctttctctgccatagttttagaaattgaat |
28013486 |
T |
|
| Q |
104 |
atgaccaagcaaaaggcttcaaatttctaagaatattcacatcactccaataactttcatccattacatcttcttctttgtcttgcatatacacagcaga |
203 |
Q |
| |
|
||||||||||||| || ||||||| |||||||| ||| |||||||||||||||| |||||||||||||| || ||||| |||||| |||||||||||| |
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| T |
28013485 |
atgaccaagcaaatggtttcaaatctctaagaagattttcatcactccaataactctcatccattacatcatcatctttatcttgccaatacacagcaga |
28013386 |
T |
|
| Q |
204 |
agcacttgaagtgtaaataactcttttcactgtctttgaatttttgcatgcttttagaattcctaatgctccatcaat |
281 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28013385 |
agcacttgaagtgtaaataactctcttcacggtctttgaatttttgcatgcttttagaattcctaatgttccatcaat |
28013308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 28005649 - 28005369
Alignment:
| Q |
1 |
aagggtccaacaacaaaacttggtacaagtgtcacaatatccaacccatgttgttctccaaattctagaacagctttctcagctagggttttagaaacag |
100 |
Q |
| |
|
|||| ||||||||| ||| |||||| | ||||||| ||| || ||| ||||||||||||| ||||||||| | ||||| || | |||||||||| | |
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| T |
28005649 |
aaggatccaacaactaaagttggtattatagtcacaacatctaaaccaagttgttctccaaactctagaacaaccttctctgccattgttttagaaattg |
28005550 |
T |
|
| Q |
101 |
catatgaccaagcaaaaggcttcaaatttctaagaatattcacatcactccaataactttcatccattacatcttcttctttgtcttgcatatacacagc |
200 |
Q |
| |
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||| |||||| |||| || ||||||| |||||||||||| |||||||||||||||| ||||||||||||| || ||||| |||||| |||||| || |
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| T |
28005549 |
aatacgaccaaccaaatggtttcaaatctctaagaatattttcatcactccaataactctcatccattacattgtcatctttatcttgccaatacactgc |
28005450 |
T |
|
| Q |
201 |
agaagcacttgaagtgtaaataactcttttcactgtctttgaatttttgcatgcttttagaattcctaatgctccatcaat |
281 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28005449 |
tgaagcacttgaagtgtaaataactctcttcacggtctttgaatttttgcatgcttttagaattcctaatgctccatcaat |
28005369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 272
Target Start/End: Complemental strand, 27944826 - 27944600
Alignment:
| Q |
46 |
ccatgttgttctccaaattctagaacagctttctcagctagggttttagaaacagcatatgaccaagcaaaaggcttcaaatttctaagaatattcacat |
145 |
Q |
| |
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|||| |||||| |||||||| ||||||||||||||||| | || |||||||||||||| |||| |||| || || | | ||||||| | || |||| |
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| T |
27944826 |
ccattttgttcaccaaattcaagaacagctttctcagccaatgtcttagaaacagcataattccaaccaaatggtttaacacttctaagcaaatcaacat |
27944727 |
T |
|
| Q |
146 |
cactccaataactttcatccattacatcttcttctttgtc-ttgcatatacacagcagaagcacttgaagtgtaaataactcttttcactgtctttgaat |
244 |
Q |
| |
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||||||||| ||| ||||||| ||||||| ||||| | ||| || | ||||||||| ||||||||||||| |||| ||| |||||||||||||||| |
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| T |
27944726 |
cactccaatcactctcatccaacacatctttgtcttttccattgaatgaa-acagcagaaccacttgaagtgtatataaatctcttcactgtctttgaat |
27944628 |
T |
|
| Q |
245 |
ttttgcatgcttttagaattcctaatgc |
272 |
Q |
| |
|
| |||||||||| ||| |||||||| |
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|
| T |
27944627 |
tcacacatgcttttaaaatgcctaatgc |
27944600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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