View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985_low_18 (Length: 285)
Name: NF9985_low_18
Description: NF9985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 43548718 - 43548899
Alignment:
| Q |
13 |
gcagagatatgcacacttgatcgaaatgcataaacaaagaccgtgtttattgccttacgatttatgtttcttttattctcttactacaacaacaattgtt |
112 |
Q |
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| T |
43548718 |
gcagagatatgcacacttgatcgaaatgcataaacaaagaccgtgtttattgccttacgatttatgtttcttttattctcttactacaacaacaattgtt |
43548817 |
T |
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| Q |
113 |
gtagtaacacatagtctccaaatatcacgcgatggaacaacagttaagtatatctcttagcttaatatgataaagaaatggt |
194 |
Q |
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| T |
43548818 |
gtagtaacacatagtctccaaatatcacgcgatggaacaacagttaagtatatctcttagcttaatatgataaagaaatggt |
43548899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 43549541 - 43549360
Alignment:
| Q |
13 |
gcagagatatgcacacttgatcgaaatgcataaacaaagaccgtgtttattgccttacgatttatgtttcttttattctcttactacaacaacaattgtt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43549541 |
gcagagatatgcacacttgatcgaaatgcataaacaaagaccgtgtttattgccttacgatttatgtttcttttattctcttactacaacaacaattgtt |
43549442 |
T |
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| Q |
113 |
gtagtaacacatagtctccaaatatcacgcgatggaacaacagttaagtatatctcttagcttaatatgataaagaaatggt |
194 |
Q |
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| T |
43549441 |
gtagtaacacatagtctccaaatatcacgcgatggaacaacagttaagtatatctcttagcttaatatgataaagaaatggt |
43549360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 241 - 285
Target Start/End: Complemental strand, 43549331 - 43549287
Alignment:
| Q |
241 |
tgtcattttccattaccctaaccagagtgatggggttcagttaaa |
285 |
Q |
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| T |
43549331 |
tgtcattttccattaccctaatcagagtgatggggttcagttaaa |
43549287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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