View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985_low_19 (Length: 266)
Name: NF9985_low_19
Description: NF9985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 43549028 - 43549263
Alignment:
| Q |
1 |
tctcaaaaccgatccaaattgcaacatgaacctccctaatttccactacaagttcagtaaatattcattttccaactttacaacttactgaaatctattt |
100 |
Q |
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| T |
43549028 |
tctcaaaaccgatccaaattgcaacatgaacctccctaatttccactacaagttcagtaaatattcattt-ccaactttacaacttactgaaatctattt |
43549126 |
T |
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| Q |
101 |
ctatgttttcttatttgacaaaattccatttctatagttgtggtatgttcttttgtggatatgtttcttctattgttttccttcatgttacacgttcttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43549127 |
gtatgttttcttatttgacaaaattccatttctatagttgtggtatgttcttttgtggatatgtttcttctattgttttccttcatgttacacgttcttt |
43549226 |
T |
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| Q |
201 |
gagtcataatattctaaataagttattgctgggactg |
237 |
Q |
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||||||||||||| ||||||||||||||||||||||| |
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| T |
43549227 |
gagtcataatattataaataagttattgctgggactg |
43549263 |
T |
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