View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985_low_2 (Length: 534)
Name: NF9985_low_2
Description: NF9985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985_low_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 17 - 534
Target Start/End: Complemental strand, 15514225 - 15513708
Alignment:
| Q |
17 |
caagacacgaaaaccatagtcaagtttgataagaatgacattgcaaagcgcaatgaggaagaagaagcagccggagacaaatccagcaccacataacagc |
116 |
Q |
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| T |
15514225 |
caagatacgaaaaccatagccaagtttgataagaatgacattgcaaagcgcaatgaggaagaagaagcagccggagacaaatccagcaccacataacagc |
15514126 |
T |
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| Q |
117 |
ataccgaggcgtaaggcgaacctgcttatctggctttcttcgtggatgaagaaggttgacatgaggcacatcgagagggtggcggtcaaatcgaaacaac |
216 |
Q |
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| T |
15514125 |
ataccgaggcgtaaggcgaacctgcttatctggttttcttcgtggatgaagaaggttgacatgaggcacatcgcgagggtggcggtcaaatcgaaacaac |
15514026 |
T |
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| Q |
217 |
agcatgaccaacctgtgaacatgaaaatgtttgatttgggaagacaatttgattctgatgatgaaaaaactgagattggtatcaataaaagacatgttgc |
316 |
Q |
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| T |
15514025 |
agcatgaccaacctgtgaacatgaaaatgtttgatttgggaagacaatttgattctgatgatgaaaaaactgagatttgcatcaagaaaagacatgttgc |
15513926 |
T |
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| Q |
317 |
caatccaaagagggagtttatcttccccatcttatataaggcgttgatctgatcaatggggtaattattggccatggagcttgcttgagatagagagaat |
416 |
Q |
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| T |
15513925 |
caatccaaagagggagtttatcttccccatcttatataaggcgttgatctgatcaatggggtaattattggccatggagcttgcttgagatagagagaat |
15513826 |
T |
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| Q |
417 |
atacgtagtaatttcacttagattatttgctgattatgaaaaagttgtgtagagaggtgatatatgtagaggaaggaagaaagtttggtcgacatgacat |
516 |
Q |
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| T |
15513825 |
atacgtagtaatttcacttggattatttgctgattattaaaaagttgtgtagagaggtgatatatgtagaggaaggaagaaagtttggtcgatatgacat |
15513726 |
T |
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| Q |
517 |
gaggtccattgaaatgcc |
534 |
Q |
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| T |
15513725 |
gaggtccattgaaatgcc |
15513708 |
T |
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