View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985_low_20 (Length: 253)
Name: NF9985_low_20
Description: NF9985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 1250429 - 1250628
Alignment:
| Q |
20 |
catagcatatattttgcttatctataaggaatcactccataaaagaaagttaatnnnnnnngttaatcnnnnnnn-gtttgttccaagccatgcaagaat |
118 |
Q |
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| T |
1250429 |
catagcatatattttgcttatctataaggaatcacttcataaaagaaagttaataaaaaaagttaattttttttttgtttgttccaagccatgcaagaat |
1250528 |
T |
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| Q |
119 |
atgattccctccctcccattaatctgcatcatcaccaattcaccatcactatttagtgctctagtccctccatccaaatcacttcctcacaaacaaaacc |
218 |
Q |
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| T |
1250529 |
atgattccctccctcccattaatctgcatcatcaccaattcaccatcactatttagtgctctagtccctccatccaaatcacttcctcacaaacaaaacc |
1250628 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 8269309 - 8269359
Alignment:
| Q |
133 |
cccattaatctgcatcatcaccaattcaccatcactatttagtgctctagtc |
184 |
Q |
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| T |
8269309 |
cccattcatctgcatcatcaccaattcaccatcactaatta-tgctctagtc |
8269359 |
T |
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