View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985_low_28 (Length: 227)
Name: NF9985_low_28
Description: NF9985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 1250674 - 1250893
Alignment:
| Q |
1 |
ttgatatccttctatcttaatattagatcatgtgtgattcaagaaatttaagaactgttattgactttggctcctaaatgtgtgcaatgacgctcgaaga |
100 |
Q |
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| T |
1250674 |
ttgatatccttctatgttaatattagatcatgtgtgattcaagacatttaagaactgttattgactttggctcctaaatgtgtgcaatggcgctcgaaga |
1250773 |
T |
|
| Q |
101 |
tcggccacaactatgtggagcaacatccttggggatgggtggattcggtaaaacatcgagga-ggtacgtacgtttctacacattttgttcttatgtttt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
1250774 |
tcggccacaactatgtggagcaacatccttggggatgggtggattcggtaaaacattgaggatcgtacgtacatttctacacattttgttcttatgtttt |
1250873 |
T |
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| Q |
200 |
cacttgataacacctatgct |
219 |
Q |
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|||||| ||||| ||||||| |
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| T |
1250874 |
cacttggtaacatctatgct |
1250893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 7 - 155
Target Start/End: Original strand, 8269440 - 8269587
Alignment:
| Q |
7 |
tccttctatcttaatattagatcatgtgtgattcaagaaatttaagaactgttattgactttggctcctaaatgtgtgcaatgacgctcgaagatcggcc |
106 |
Q |
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| T |
8269440 |
tccttctattttaatat-agatcatgtgggattcaagacatttaggaactgttattgactttggctcccaaatgcatgcaatgacggttgaagatcggcc |
8269538 |
T |
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| Q |
107 |
acaactatgtggagcaacatccttggggatgggtggattcggtaaaaca |
155 |
Q |
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| T |
8269539 |
acaactatgtggaacaacatccttggggatgggcggattcggtaaaaca |
8269587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 8287812 - 8287898
Alignment:
| Q |
82 |
gtgcaatgacgctcgaagatcggccacaactatgtggagcaacatccttggggatgggtggattcggtaaaacatcgaggaggtacg |
168 |
Q |
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| T |
8287812 |
gtgcaatgacagtcgaagatcagtcacaactatgtggatcgacatccttaggcatgggtggattcggtaaaacatcgaggaggtacg |
8287898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 8275035 - 8275072
Alignment:
| Q |
168 |
gtacgtttctacacattttgttcttatgttttcacttg |
205 |
Q |
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| T |
8275035 |
gtacatttctacacattttgttcttctgttttcacttg |
8275072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 26585307 - 26585364
Alignment:
| Q |
97 |
aagatcggccacaactatgtggagcaacatccttggggatgggtggattcggtaaaac |
154 |
Q |
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| T |
26585307 |
aagatcggccacaactatgtggagcaacaaccttgggaatgggtggattcggtaaaac |
26585364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 20507404 - 20507332
Alignment:
| Q |
1 |
ttgatatccttctatcttaatattagatcatgtgtgattcaagaaatttaagaactgttattgactttggctcc |
74 |
Q |
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||||||||||||||| | ||||| || ||| ||| ||||||||| ||||| |||||| | |||||||||||||| |
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| T |
20507404 |
ttgatatccttctatatgaatat-aggtcaggtgggattcaagacatttaggaactgatgttgactttggctcc |
20507332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 17231896 - 17231932
Alignment:
| Q |
168 |
gtacgtttctacacattttgttcttatgttttcactt |
204 |
Q |
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| T |
17231896 |
gtacatttctacacattttgttcttctgttttcactt |
17231932 |
T |
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