View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985_low_3 (Length: 486)
Name: NF9985_low_3
Description: NF9985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 106 - 460
Target Start/End: Complemental strand, 12840014 - 12839662
Alignment:
| Q |
106 |
atttggttcatgacagtacacgacacttaaaatatcacagctataattaaaaaccattcgtatatgattaccgacaacttgctttacaggttgtttcatc |
205 |
Q |
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| T |
12840014 |
atttggttcatgacagtacgcgacacttaaaatatcacagctataattaaaaaccattcgtatatgattacggacaacttactttacaggttgtttcatc |
12839915 |
T |
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| Q |
206 |
gtgtgcaaaacttgacagtgctccatttgcaattgcatatgtcattcttcacattacatctcaggtacaccatgtttaatctctagcctctcggctttat |
305 |
Q |
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| T |
12839914 |
gtgtgcaaaacttgacagtgctccatttacaattgcatatgtcatt--tcacattacatctcaggtacaccatgtttaatctctagcctctcggctttat |
12839817 |
T |
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| Q |
306 |
taggacttaggaggatggaggcggtatataattaagctttcaaggaagcatagaatgaatatgaatgtttatggtgtttcaactgtttttcatttgtaag |
405 |
Q |
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| T |
12839816 |
taggacttaggaggatggaagcggtatataattaagctttcaaggaagcatagaatgaatatgaatgtttatggtgtttcaactgtttttcatttgtaag |
12839717 |
T |
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| Q |
406 |
gtaggtcccatatgcaatggatatcattctagctgagcttcataaggcctgccta |
460 |
Q |
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| T |
12839716 |
gtaggtcccatatgcaatggatatcattctagctgagcttcataaggcctgccta |
12839662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 12840028 - 12839956
Alignment:
| Q |
33 |
tatatctttggaatatttggttcatgacactacacgacaaataaaatatcacagctataactaaaaaccattc |
105 |
Q |
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| T |
12840028 |
tatatttttggaatatttggttcatgacagtacgcgacacttaaaatatcacagctataattaaaaaccattc |
12839956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 178 - 297
Target Start/End: Original strand, 39177910 - 39178029
Alignment:
| Q |
178 |
gacaacttgctttacaggttgtttcatcgtgtgcaaaacttgacagtgctccatttgcaattgcatatgtcattcttcacattacatctcaggtacacca |
277 |
Q |
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| T |
39177910 |
gacaacatactttacaggttgttttgtcctgtgcaagccctgctagtgctccctttgcaattgcctctgtcattgttctcattacatctcaggtacatca |
39178009 |
T |
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| Q |
278 |
tgtttaatctctagcctctc |
297 |
Q |
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| T |
39178010 |
tgtttattgtctagcctctc |
39178029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 39199342 - 39199375
Alignment:
| Q |
257 |
cattacatctcaggtacaccatgtttaatctcta |
290 |
Q |
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| T |
39199342 |
cattacatctcaggtacaccgtgtttaatctcta |
39199375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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