View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9985_low_4 (Length: 458)

Name: NF9985_low_4
Description: NF9985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9985_low_4
NF9985_low_4
[»] chr7 (11 HSPs)
chr7 (7-448)||(2359236-2359682)
chr7 (250-340)||(26385817-26385903)
chr7 (254-319)||(8745484-8745549)
chr7 (251-328)||(28534162-28534239)
chr7 (222-342)||(31409589-31409710)
chr7 (249-319)||(6726075-6726145)
chr7 (249-319)||(47456729-47456799)
chr7 (274-342)||(9107483-9107551)
chr7 (220-328)||(13312183-13312291)
chr7 (284-340)||(22567783-22567838)
chr7 (250-342)||(23983576-23983668)
[»] chr5 (6 HSPs)
chr5 (248-342)||(24071916-24072010)
chr5 (284-340)||(30097667-30097723)
chr5 (220-335)||(8731277-8731391)
chr5 (220-328)||(23426646-23426754)
chr5 (286-340)||(25657813-25657866)
chr5 (255-319)||(31722026-31722089)
[»] chr3 (6 HSPs)
chr3 (250-342)||(46358039-46358131)
chr3 (250-337)||(27399325-27399413)
chr3 (220-340)||(50518716-50518836)
chr3 (245-340)||(14893264-14893359)
chr3 (253-342)||(32010119-32010208)
chr3 (251-319)||(14280207-14280275)
[»] chr2 (8 HSPs)
chr2 (249-337)||(27740325-27740413)
chr2 (220-335)||(25504516-25504630)
chr2 (274-342)||(16952025-16952093)
chr2 (274-342)||(17022690-17022758)
chr2 (249-337)||(22884770-22884858)
chr2 (249-328)||(33788281-33788360)
chr2 (250-338)||(15361059-15361148)
chr2 (284-328)||(34230547-34230591)
[»] scaffold1613 (1 HSPs)
scaffold1613 (252-342)||(654-744)
[»] chr1 (8 HSPs)
chr1 (252-342)||(38544375-38544465)
chr1 (278-342)||(32882699-32882763)
chr1 (250-342)||(41126108-41126200)
chr1 (250-340)||(34775206-34775296)
chr1 (250-319)||(376463-376532)
chr1 (250-342)||(27905764-27905855)
chr1 (251-318)||(37200498-37200565)
chr1 (221-340)||(49820489-49820609)
[»] chr6 (3 HSPs)
chr6 (250-342)||(17278119-17278211)
chr6 (250-317)||(32934004-32934070)
chr6 (222-340)||(16180486-16180605)
[»] scaffold0050 (1 HSPs)
scaffold0050 (250-340)||(37041-37131)
[»] chr4 (3 HSPs)
chr4 (250-334)||(48098646-48098730)
chr4 (249-340)||(28967209-28967300)
chr4 (220-328)||(12296520-12296627)
[»] chr8 (2 HSPs)
chr8 (251-342)||(12197733-12197824)
chr8 (251-342)||(12442161-12442252)


Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 7 - 448
Target Start/End: Complemental strand, 2359682 - 2359236
Alignment:
Q  7 ggttacactttagaactt--acgattttatgcaaaagccgtgttatttttagcgaaacattcggtcgtggtatggtcgtgaactattttatcaagagaaa 104  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  2359682 ggttacactttagaacttggacgattttatgcaaaagccgtgttatttttagcgaagcattcggtcgtggtatggtcgtgaactattttatcaggagaaa 2359583  T
Q  105 tagcatttttctttgtgcaattaacaactttcattatacttagcttagtttacacgaatattaaaattgcatacatgacaagatgctaacagagttaaag 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2359582 tagcatttttctttgtgcaattaacaactttcattatacttagcttagtttacacgaatattaaaattgcatacatgacaagatgctaacagagttaaag 2359483  T
Q  205 tgactannnnnnnnnaacagcaaattttatataaagatttgatatctgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccg- 303  Q
    ||| ||         ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  2359482 tgattatttttttttaacagcaaattttatataaagatttgatatctgctcaagacgaacagagagtggtgattcagaaaatacaaactacagacgccgc 2359383  T
Q  304 --tatataggcggaacacacaaaaatatacaccataaaagaaataaacatcactatctaaacacataatccatcgcgaaacgaccactataaaacaatat 401  Q
      |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2359382 cgtatataggcgaaacacacgaaaatatacaccataaaagaaataaacatcactatctaaacacataatccatcacgaaacgaccactataaaacaatat 2359283  T
Q  402 ctataaccactcatcgccaatgagtatcttaaaataacacccctttg 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2359282 ctataaccactcatcgccaatgagtatcttaaaataacacccctttg 2359236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 340
Target Start/End: Original strand, 26385817 - 26385903
Alignment:
Q  250 ctgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacacacaaaaatatacaccataaaa 340  Q
    ||||||||||||||||||||  ||||||||||||| |||||   | |||||||||||||||||||||||| | |||||| |||||||||||    
T  26385817 ctgctcaagacgaacagagaccgatgattcagaaactacaa---aaagacgccgtatataggcggaacac-ccaaaataaacaccataaaa 26385903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 8745549 - 8745484
Alignment:
Q  254 tcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacac 319  Q
    |||||||||||||||| || |||  | ||||||| |||| | ||||||||||||||||||||||||    
T  8745549 tcaagacgaacagagactggtgaaactgaaaatagaaacaagagacgccgtatataggcggaacac 8745484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 28534162 - 28534239
Alignment:
Q  251 tgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacacacaaaaata 328  Q
    |||||||||||||||||||  | ||||| ||| ||||||||  | || ||||||||||||||||||||| | ||||||    
T  28534162 tgctcaagacgaacagagaccggtgatttagagaatacaaataaaaggcgccgtatataggcggaacacccgaaaata 28534239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 222 - 342
Target Start/End: Original strand, 31409589 - 31409710
Alignment:
Q  222 cagcaaattttatataaagatttgatatctgctcaagacgaacagagagtgatgattcagaaaatacaaact-acagacgccgtatataggcggaacaca 320  Q
    ||||||||||||| |||| |   ||| |||||||||||| || ||||| |||||||| ||| ||||||| || | ||| | |||||||||| ||||||||    
T  31409589 cagcaaattttatctaaaaaccagatctctgctcaagacaaaaagagactgatgattaagataatacaagctaaaagatggcgtatataggtggaacaca 31409688  T
Q  321 caaaaatatacaccataaaaga 342  Q
      |||||| ||||||| |||||    
T  31409689 tgaaaataaacaccattaaaga 31409710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 319
Target Start/End: Original strand, 6726075 - 6726145
Alignment:
Q  249 tctgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacac 319  Q
    |||||||||||||||||||||  | |||  | || ||||||||| | | ||||||||||||||||||||||    
T  6726075 tctgctcaagacgaacagagatcggtgaaactgagaatacaaacaaaaaacgccgtatataggcggaacac 6726145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 319
Target Start/End: Original strand, 47456729 - 47456799
Alignment:
Q  249 tctgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacac 319  Q
    |||||||||||||||||||||  | |||  |||||||||||||  | || ||| |||||||||||||||||    
T  47456729 tctgctcaagacgaacagagaccggtgaaacagaaaatacaaatgaaaggcgcagtatataggcggaacac 47456799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 9107551 - 9107483
Alignment:
Q  274 tgattcagaaaatacaaactacagacgccgtatataggcggaacacacaaaaatatacaccataaaaga 342  Q
    ||||||| | ||||||||  | || ||||||||| ||||||||| |||||||||  |||||||||||||    
T  9107551 tgattcaaagaatacaaatcaaaggcgccgtataaaggcggaacgcacaaaaatgaacaccataaaaga 9107483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 328
Target Start/End: Complemental strand, 13312291 - 13312183
Alignment:
Q  220 aacagcaaattttatataaagatttgatatctgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacac 319  Q
    ||||||||||||||| |||  | | ||| || ||| ||||||||| ||||   |||||||||| ||||||||||| || |   |||||||||||||||||    
T  13312291 aacagcaaattttatttaataactcgatctcagcttaagacgaactgagatcaatgattcagataatacaaactaaaggctttgtatataggcggaacac 13312192  T
Q  320 acaaaaata 328  Q
     | ||||||    
T  13312191 ccgaaaata 13312183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 22567783 - 22567838
Alignment:
Q  284 aatacaaactacagacgccgtatataggcggaacacacaaaaatatacaccataaaa 340  Q
    ||||||||| | || |||||||||||||||||||||| ||||| | |||||||||||    
T  22567783 aatacaaacaaaaggcgccgtatataggcggaacaca-aaaaaaacacaccataaaa 22567838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 342
Target Start/End: Complemental strand, 23983668 - 23983576
Alignment:
Q  250 ctgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacacacaaaaatatacaccataaaaga 342  Q
    |||||||| ||||||| |||  | ||||||||| |||||||| || || |  |||||||||||||| ||  |||||||| ||| |||||||||    
T  23983668 ctgctcaaaacgaacaaagatcggtgattcagagaatacaaattaaaggcatcgtatataggcggagcatccaaaaataaacatcataaaaga 23983576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 248 - 342
Target Start/End: Original strand, 24071916 - 24072010
Alignment:
Q  248 atctgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacacacaaaaatatacaccataaaaga 342  Q
    ||||||| ||||| |||| |||  ||||||||||| |||||||||||  | ||||||||||||||||||||| | |||||| ||| |||||||||    
T  24071916 atctgcttaagacaaacaaagaccgatgattcagataatacaaactaagggcgccgtatataggcggaacacccgaaaataaacatcataaaaga 24072010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 340
Target Start/End: Complemental strand, 30097723 - 30097667
Alignment:
Q  284 aatacaaactacagacgccgtatataggcggaacacacaaaaatatacaccataaaa 340  Q
    ||||||||||| |||||||||||||||||||||||| | |||||| ||||| |||||    
T  30097723 aatacaaactaaagacgccgtatataggcggaacacccgaaaataaacaccctaaaa 30097667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 335
Target Start/End: Complemental strand, 8731391 - 8731277
Alignment:
Q  220 aacagcaaattttatataaagatttgatatctgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacac 319  Q
    ||||||||||||||| |||| ||  |||  ||||||||||| |||||| |  | ||||||||| ||||||||| | || |||||||||||| || |||||    
T  8731391 aacagcaaattttat-taaaaatcagatccctgctcaagacaaacagaaaccggtgattcagagaatacaaacaaaaggcgccgtatatagacgaaacac 8731293  T
Q  320 acaaaaatatacacca 335  Q
     |||||||| ||||||    
T  8731292 ccaaaaataaacacca 8731277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 328
Target Start/End: Complemental strand, 23426754 - 23426646
Alignment:
Q  220 aacagcaaattttatataaagatttgatatctgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacac 319  Q
    ||||||||||||||| |||| ||  |||  |||||||||| |||||||||  | ||||||||| |||||||   | ||  ||||||||||||||||||||    
T  23426754 aacagcaaattttatttaaaaatcagattgctgctcaagaggaacagagaccggtgattcagagaatacaactaaaaggtgccgtatataggcggaacac 23426655  T
Q  320 acaaaaata 328  Q
     | ||||||    
T  23426654 ccgaaaata 23426646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 340
Target Start/End: Original strand, 25657813 - 25657866
Alignment:
Q  286 tacaaactacagacgccgtatataggcggaacacacaaaaatatacaccataaaa 340  Q
    |||||||||||| |||||||||||||| |||||| | |||||| |||||||||||    
T  25657813 tacaaactacaggcgccgtatataggcagaacac-ctaaaataaacaccataaaa 25657866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 319
Target Start/End: Complemental strand, 31722089 - 31722026
Alignment:
Q  255 caagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacac 319  Q
    |||||||||||||||  |||| | |||||| ||||||||| || |||||||||||| ||||||||    
T  31722089 caagacgaacagagaccgatgttacagaaagtacaaacta-aggcgccgtatatagacggaacac 31722026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 342
Target Start/End: Original strand, 46358039 - 46358131
Alignment:
Q  250 ctgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacacacaaaaatatacaccataaaaga 342  Q
    ||||||||||||||||||||     |||||||||||||||||||| |||||| ||||||||||| |||||   |||||| ||||| |||||||    
T  46358039 ctgctcaagacgaacagagaccagagattcagaaaatacaaactaaagacgctgtatataggcgaaacacctgaaaataaacaccttaaaaga 46358131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 337
Target Start/End: Complemental strand, 27399413 - 27399325
Alignment:
Q  250 ctgctcaagacgaacagagagtgatgattcagaaaatacaaact-acagacgccgtatataggcggaacacacaaaaatatacaccata 337  Q
    ||||||||||| ||||||||   ||||||||||||||||||| | | |||||  ||||||||| | ||||| |||||||| ||||||||    
T  27399413 ctgctcaagacaaacagagaaccatgattcagaaaatacaaattaaaagacgttgtatataggtgaaacacccaaaaataaacaccata 27399325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 340
Target Start/End: Original strand, 50518716 - 50518836
Alignment:
Q  220 aacagcaaattttatataaagatttgatatctgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacac 319  Q
    |||| ||||||||||  ||  |||||||  |||||||||||||||||||| || |||  | || ||||||||| | ||  | ||||||||||||||||||    
T  50518716 aacatcaaattttattaaacaatttgatccctgctcaagacgaacagagactggtgaaactgagaatacaaacaaaaggtgtcgtatataggcggaacac 50518815  T
Q  320 acaaaaatatacaccataaaa 340  Q
     | |||||| ||||| |||||    
T  50518816 ccgaaaataaacaccctaaaa 50518836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 340
Target Start/End: Complemental strand, 14893359 - 14893264
Alignment:
Q  245 gatatctgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacacacaaaaatatacaccataaaa 340  Q
    |||| |||||||||| ||||||||| || |||  | || | ||||||| | ||||||||||||||||||||||||   |||||| ||||| |||||    
T  14893359 gataactgctcaagatgaacagagactggtgaaaccgagagtacaaacaaaagacgccgtatataggcggaacacctgaaaataaacaccctaaaa 14893264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 342
Target Start/End: Complemental strand, 32010208 - 32010119
Alignment:
Q  253 ctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacacacaaaaatatacaccataaaaga 342  Q
    |||||||||||||||||  | ||||||||| ||||||| ||| |  || ||||||||||||||| ||   |||||| ||||| |||||||    
T  32010208 ctcaagacgaacagagatcggtgattcagagaatacaacctaaaagcgtcgtatataggcggaatacctgaaaataaacaccttaaaaga 32010119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 14280207 - 14280275
Alignment:
Q  251 tgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacac 319  Q
    ||||||||||||||| |||  |||||  | || |||||||| || || |||||||||||||||||||||    
T  14280207 tgctcaagacgaacaaagatcgatgaaactgataatacaaattaaaggcgccgtatataggcggaacac 14280275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 337
Target Start/End: Complemental strand, 27740413 - 27740325
Alignment:
Q  249 tctgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacacacaaaaatatacaccata 337  Q
    ||||||||||||||||| |||  ||||||||||| ||||||||||| || || |||||||||| ||||||| | |||||| || |||||    
T  27740413 tctgctcaagacgaacaaagatcgatgattcagataatacaaactaaaggcgtcgtatataggtggaacacccgaaaataaactccata 27740325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 335
Target Start/End: Original strand, 25504516 - 25504630
Alignment:
Q  220 aacagcaaattttatataaagatttgatatctgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacac 319  Q
    ||||||||||||||| |||| ||  |||  ||||||||||| |||||| |  | ||||||||| ||||||||| | || |||||||||||| || |||||    
T  25504516 aacagcaaattttat-taaaaatcagatccctgctcaagacaaacagaaaccggtgattcagagaatacaaacaaaaggcgccgtatatagacgaaacac 25504614  T
Q  320 acaaaaatatacacca 335  Q
     |||||||| ||||||    
T  25504615 ccaaaaataaacacca 25504630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 342
Target Start/End: Original strand, 16952025 - 16952093
Alignment:
Q  274 tgattcagaaaatacaaactacagacgccgtatataggcggaacacacaaaaatatacaccataaaaga 342  Q
    ||||| ||| ||||||||||| ||||| ||||||||||| |||||  |||||||| ||| |||||||||    
T  16952025 tgatttagagaatacaaactatagacgtcgtatataggcagaacatccaaaaataaacatcataaaaga 16952093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 342
Target Start/End: Original strand, 17022690 - 17022758
Alignment:
Q  274 tgattcagaaaatacaaactacagacgccgtatataggcggaacacacaaaaatatacaccataaaaga 342  Q
    ||||| ||| ||||||||||| ||||| ||||||||||| |||||  |||||||| ||| |||||||||    
T  17022690 tgatttagagaatacaaactatagacgtcgtatataggcagaacatccaaaaataaacatcataaaaga 17022758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 337
Target Start/End: Original strand, 22884770 - 22884858
Alignment:
Q  249 tctgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacacacaaaaatatacaccata 337  Q
    ||||||||||||||||| |||  || |||  ||| ||||||||||| || || |||||||||||||||||| | |||||| || |||||    
T  22884770 tctgctcaagacgaacaaagaccgacgatatagagaatacaaactaaaggcgtcgtatataggcggaacacccgaaaataaactccata 22884858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 328
Target Start/End: Original strand, 33788281 - 33788360
Alignment:
Q  249 tctgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacacacaaaaata 328  Q
    |||||| ||||||||||||||  | |||| | || ||||||||||| || ||||||||||| ||||||||| | ||||||    
T  33788281 tctgctaaagacgaacagagaccggtgataccgagaatacaaactaaaggcgccgtatatatgcggaacacccgaaaata 33788360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 338
Target Start/End: Complemental strand, 15361148 - 15361059
Alignment:
Q  250 ctgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacacac-aaaaatatacaccataa 338  Q
    |||||||||||||| ||||| || |||  |||| ||||||||| | || |||||||||||| || ||||| | ||||||| |||||||||    
T  15361148 ctgctcaagacgaatagagactggtgaaacagataatacaaacgaaaggcgccgtatatagacgaaacacccaaaaaataaacaccataa 15361059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 34230591 - 34230547
Alignment:
Q  284 aatacaaactacagacgccgtatataggcggaacacacaaaaata 328  Q
    ||||||||| | ||||||||||||||||||||||||  |||||||    
T  34230591 aatacaaacaaaagacgccgtatataggcggaacaccaaaaaata 34230547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 252 - 342
Target Start/End: Original strand, 654 - 744
Alignment:
Q  252 gctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacacacaaaaatatacaccataaaaga 342  Q
    |||||||||||||| |||    ||||||||| ||||||||||| ||||| |||||||| | ||||||| | |||||| |||||||||||||    
T  654 gctcaagacgaacaaagatccgtgattcagagaatacaaactaaagacgtcgtatatatgtggaacacccgaaaataaacaccataaaaga 744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 252 - 342
Target Start/End: Original strand, 38544375 - 38544465
Alignment:
Q  252 gctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacacacaaaaatatacaccataaaaga 342  Q
    |||||||||||||| |||    ||||||||| ||||||||||| ||||| |||||||| | ||||||| | |||||| |||||||||||||    
T  38544375 gctcaagacgaacaaagatccgtgattcagagaatacaaactaaagacgtcgtatatatgtggaacacccgaaaataaacaccataaaaga 38544465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 342
Target Start/End: Complemental strand, 32882763 - 32882699
Alignment:
Q  278 tcagaaaatacaaactacagacgccgtatataggcggaacacacaaaaatatacaccataaaaga 342  Q
    ||||||||||||||||| || |||||||||||||| |||||| | |||||| ||||| |||||||    
T  32882763 tcagaaaatacaaactaaaggcgccgtatataggcagaacacccgaaaataaacaccctaaaaga 32882699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 342
Target Start/End: Original strand, 41126108 - 41126200
Alignment:
Q  250 ctgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacacacaaaaatatacaccataaaaga 342  Q
    ||||||||||||||||||||  ||||||||||| ||||||||||| || |  ||||||||||  |||||| | |||||| |||  ||||||||    
T  41126108 ctgctcaagacgaacagagaccgatgattcagagaatacaaactaaaggcatcgtatataggtagaacacccgaaaataaacattataaaaga 41126200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 340
Target Start/End: Complemental strand, 34775296 - 34775206
Alignment:
Q  250 ctgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacacacaaaaatatacaccataaaa 340  Q
    |||||||||||||||| |||  ||| |  | || ||||||||||| || ||||||||||||||||||||| | |||||| ||||| |||||    
T  34775296 ctgctcaagacgaacaaagaccgataaagctgagaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccttaaaa 34775206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 376463 - 376532
Alignment:
Q  250 ctgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacac 319  Q
    ||||||||||||||||||||  |||||  |||| |||||||| || || |||||||||||||| ||||||    
T  376463 ctgctcaagacgaacagagacggatgaaacagagaatacaaagtaaaggcgccgtatataggcagaacac 376532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 342
Target Start/End: Complemental strand, 27905855 - 27905764
Alignment:
Q  250 ctgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacacacaaaaatatacaccataaaaga 342  Q
    |||||||||| ||| |||||  | ||| ||||| | ||||||||| || || |||||||||| |||||||| ||||||| |||||||||||||    
T  27905855 ctgctcaagaagaatagagaccggtgaatcagagactacaaactagaggcgtcgtatataggtggaacaca-aaaaataaacaccataaaaga 27905764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 318
Target Start/End: Complemental strand, 37200565 - 37200498
Alignment:
Q  251 tgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaaca 318  Q
    |||||||||||||||||||  | |||| | || ||||||||||| ||||  |||||||||||||||||    
T  37200565 tgctcaagacgaacagagaccggtgataccgagaatacaaactaaagacatcgtatataggcggaaca 37200498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 340
Target Start/End: Complemental strand, 49820609 - 49820489
Alignment:
Q  221 acagcaaattttatataaagatttgatatctgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacaca 320  Q
    |||||||||||||| |||  || |||| ||||||||||||  | |||||  | ||| ||||| ||||||||| | ||||| | ||| ||||||||||||     
T  49820609 acagcaaattttatttaacaatctgatctctgctcaagacagatagagatcggtgaatcagagaatacaaaccaaagacgtcatatgtaggcggaacacc 49820510  T
Q  321 c-aaaaatatacaccataaaa 340  Q
    |  |||||| |||||||||||    
T  49820509 cggaaaataaacaccataaaa 49820489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 342
Target Start/End: Original strand, 17278119 - 17278211
Alignment:
Q  250 ctgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacacacaaaaatatacaccataaaaga 342  Q
    ||||| |||| |||||||||  | ||||||||| ||||||| ||| || || |||||||||||||||||| | |||||| ||| |||||||||    
T  17278119 ctgcttaagatgaacagagaccggtgattcagagaatacaatctaaaggcgtcgtatataggcggaacacccgaaaataaacatcataaaaga 17278211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 317
Target Start/End: Original strand, 32934004 - 32934070
Alignment:
Q  250 ctgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaac 317  Q
    |||||||||| ||||||||| || ||||| ||| ||||||||||| ||||| |||||||||| |||||    
T  32934004 ctgctcaagatgaacagagactggtgatt-agataatacaaactaaagacgtcgtatataggtggaac 32934070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 340
Target Start/End: Original strand, 16180486 - 16180605
Alignment:
Q  222 cagcaaattttatataaagatttgatatctgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacac-- 319  Q
    ||||||||||||| |||| ||  ||| ||||||||||||||||| |||  | |||  |||| ||||||||  | |||| ||||||||| |||||||||      
T  16180486 cagcaaattttat-taaaaatcagatctctgctcaagacgaacaaagatcggtgaaacagataatacaaatgaaagacaccgtatataagcggaacacca 16180584  T
Q  320 acaaaaatatacaccataaaa 340  Q
    | ||||||| |||||||||||    
T  16180585 aaaaaaataaacaccataaaa 16180605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 340
Target Start/End: Complemental strand, 37131 - 37041
Alignment:
Q  250 ctgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacacacaaaaatatacaccataaaa 340  Q
    ||||||||||||||||||||  | |||  | || ||||||||| | |||||| ||||||||||||||||  | |||||| |||||||||||    
T  37131 ctgctcaagacgaacagagaccggtgaaactgataatacaaacaaaagacgctgtatataggcggaacatccgaaaataaacaccataaaa 37041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 334
Target Start/End: Complemental strand, 48098730 - 48098646
Alignment:
Q  250 ctgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacacacaaaaatatacacc 334  Q
    ||||||||||||||| ||||  | |||  | |||||||||||| | |||||| ||||||||||||||||| | |||||| |||||    
T  48098730 ctgctcaagacgaacggagatcggtgaaactgaaaatacaaacaaaagacgcagtatataggcggaacacccgaaaataaacacc 48098646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 340
Target Start/End: Complemental strand, 28967300 - 28967209
Alignment:
Q  249 tctgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacacacaaaaatatacaccataaaa 340  Q
    |||||||||||||||||||||  | |||  |||| ||||||||| | || ||| |||||||||||||||||   |||||| ||||| |||||    
T  28967300 tctgctcaagacgaacagagatcggtgaaacagataatacaaacgaaaggcgctgtatataggcggaacacctgaaaataaacaccctaaaa 28967209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 328
Target Start/End: Complemental strand, 12296627 - 12296520
Alignment:
Q  220 aacagcaaattttatataaagatttgatatctgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacac 319  Q
    ||||||||||||||| |||| |   ||| ||||||||| ||||| |||||  ||||||||||| ||||||||||| |   | |||||| |||| ||||||    
T  12296627 aacagcaaattttatttaaa-accagatctctgctcaaaacgaatagagaccgatgattcagagaatacaaactaaatgtgtcgtatacaggcagaacac 12296529  T
Q  320 acaaaaata 328  Q
     ||||||||    
T  12296528 ccaaaaata 12296520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 342
Target Start/End: Original strand, 12197733 - 12197824
Alignment:
Q  251 tgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacacacaaaaatatacaccataaaaga 342  Q
    ||||||||||||| |||||  | ||| ||||| ||||||||||| || || ||| ||||||||||||||   |||||| ||||| |||||||    
T  12197733 tgctcaagacgaatagagatcggtgaatcagagaatacaaactaaaggcgtcgtctataggcggaacacgggaaaataaacaccctaaaaga 12197824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 342
Target Start/End: Original strand, 12442161 - 12442252
Alignment:
Q  251 tgctcaagacgaacagagagtgatgattcagaaaatacaaactacagacgccgtatataggcggaacacacaaaaatatacaccataaaaga 342  Q
    ||||||||||||| |||||  | ||| ||||| ||||||||||| || || ||| ||||||||||||||   |||||| ||||| |||||||    
T  12442161 tgctcaagacgaatagagatcggtgaatcagagaatacaaactaaaggcgtcgtctataggcggaacacgggaaaataaacaccctaaaaga 12442252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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