View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985_low_9 (Length: 372)
Name: NF9985_low_9
Description: NF9985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 1890742 - 1890474
Alignment:
| Q |
1 |
ccatttcaatagtttcctgtcctatgatcaccacaggtggcaaaacatccttgtaaaatgaccatcttcttgtcatattttctctgacttctaagttcta |
100 |
Q |
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| T |
1890742 |
ccatttcaatagtttcctgtcctatgatcaccacaggtggcaaaacatccttgtaaaaggaccatcttcttctcatattttctctgacttctaagttcta |
1890643 |
T |
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| Q |
101 |
tcagttacacaacaatcacaaattctgctgaagttcagaatttctgtgagatgtttttcatgatgaggtttggaccataaactgaaatgaaagataaaag |
200 |
Q |
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| T |
1890642 |
tcagttacacaacaatcacaaattctgctgaagttcagaatttctatgagatgtttttcatgatgaggtttggaccataaactgaaatgaaagataaaag |
1890543 |
T |
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| Q |
201 |
ttggttggttgtattaaaagttggtatattatttaagaaactgtttatatactcccattgtactttgct |
269 |
Q |
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| T |
1890542 |
ttggttggttgtattaaaagttggtatattatttaagaaactgtttatatactcccattgtactttgct |
1890474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 1895592 - 1895517
Alignment:
| Q |
1 |
ccatttcaatagtttcctgtcctatgatcaccacaggtggcaaaacatccttgtaaaatgaccatcttcttgtcat |
76 |
Q |
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| T |
1895592 |
ccatttcaatagtttcctgtcctatgatcactaaaattggcaaaacatccatgtaaaaggaccatcttcttgtcat |
1895517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 1911015 - 1910928
Alignment:
| Q |
34 |
caggtggcaaaacatccttgtaaaatgaccatcttcttgtcatattttctctgacttctaagttctatcagttacacaacaatcacaaa |
122 |
Q |
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| T |
1911015 |
caggtggcagaacatccatgtacaaggaccatcttcttgtcatgttt-ctgtcacttctatgttctttcagttacacaacaatcacaaa |
1910928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 1901983 - 1901928
Alignment:
| Q |
21 |
cctatgatcaccacaggtggcaaaacatccttgtaaaatgaccatcttcttgtcat |
76 |
Q |
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| T |
1901983 |
cctataatcaccacaggtggcaaaacatccatgtaaagtgaccatcttcttgtcat |
1901928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 1884078 - 1883959
Alignment:
| Q |
21 |
cctatgatcaccacaggtggcaaaacatccttgtaaaatgaccatcttcttgtcatattttctctgacttctaagttctatcagttacacaacaatcaca |
120 |
Q |
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| T |
1884078 |
cctataatcacaacaggtggcagaaaatccatgtaaaaggaccgttttcttgtcatcttt-ctatgtgttctaagttttatcctatatacaacaatcaca |
1883980 |
T |
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| Q |
121 |
aattctgctgaagttcagaat |
141 |
Q |
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|| || ||||||||||||| |
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| T |
1883979 |
aaccttgttgaagttcagaat |
1883959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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