View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9986_high_1 (Length: 567)
Name: NF9986_high_1
Description: NF9986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9986_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Complemental strand, 2232046 - 2231495
Alignment:
| Q |
1 |
agttggggccaatattctaacaccagtacaaattgcacaaatccaatcttgtttataaaattcaagtcttcctttgaaatcttcagttattcctctaaat |
100 |
Q |
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| T |
2232046 |
agttggggccaatattctaacaccagtacaaattgcacaaatccaatcttgtttataaaattcaagtcttcctttgaaatcttcagttattcctctaaat |
2231947 |
T |
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| Q |
101 |
ggtcccatagctgaatagagaatgatttcttgagatatatgaactatagagctattcattcaattcaagtctatgatcaccatatattatgaaaatgtat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2231946 |
ggtcccatagctgaatagagaatgatttcttgagatatatgaactatagagctattcattcaattcaagtctatgatcaccatatattatgaaaacgtat |
2231847 |
T |
|
| Q |
201 |
aatggaaataagacaaaaaatacannnnnnn-agataatccacaagcatccctctatattatgttcgaggatttctcagacactaaatgtggacatctct |
299 |
Q |
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| T |
2231846 |
aatggaaatgagacaaaaaatacattttttttagataatccacaagcatccctctatattatgttcgaggatttctcagacactaaatgtggacatctct |
2231747 |
T |
|
| Q |
300 |
tccatttgaaccggtattatgtttcactacattgcataggactattccatttcactagactcggtcacatttgatatattacacaaattaaatacatgga |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2231746 |
tccatttgaaccggtattatgtttcactacattgcataggactattccatttcactagactcgatcacatttgatatattacacaaattaaatacatgga |
2231647 |
T |
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| Q |
400 |
atcatatagcaattcagtttgaatgaattacacattacaaaatgttgtctcataacctaaaaacttaaacaactaattaaggccttggatgtatagagaa |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2231646 |
atcatatagcaattcagtttgaatgaattacacattacaaaatgttgtctcataacctaaaaaattaaacaactaattaaggccttggatgtatagagaa |
2231547 |
T |
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| Q |
500 |
agaaaccctattttagtataaaatagtaggaaaaggatcaaaattacaaaac |
551 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2231546 |
agaaaccctattttagtataaaatagtaggaaaaggatcaaaattacaaaac |
2231495 |
T |
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