View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9986_high_2 (Length: 507)
Name: NF9986_high_2
Description: NF9986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9986_high_2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 16 - 507
Target Start/End: Complemental strand, 39289536 - 39289045
Alignment:
| Q |
16 |
agaaggataagagctaaccaaccggaaaaacggtggattcgctcgaaaacattgtggtggagatgtcgaataactggaaaagctgcgagcgaagagagtg |
115 |
Q |
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| T |
39289536 |
agaaggataagagctaaccaaccggaaaaacggtggattcgctcgaaaacattgtggtggagatgtcgaataactggaaaagctgcaagcgaagagagtg |
39289437 |
T |
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| Q |
116 |
taatgagtgagaggatggcgaatgcaacaccgagtatctccggagaagaattggttttgtcgttgcttttgatcgtgagtacgagagaataaactagcca |
215 |
Q |
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| T |
39289436 |
taatgagtgagaggatggcgaatgcaacaccgagtatctccggagaagaattggttttgtcgttgcttttgatcgtgagtacgagagaataaactagcca |
39289337 |
T |
|
| Q |
216 |
tgctatcgaagaaacgccgcagccactatgaattcctccaagactctgaagaaatgaagttattgctgttttgattctaagagaaacacaaggcttccct |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39289336 |
tgctatcgaagaaacgccgcagccactatgaattcctccaatacattgaagaaatgaagttattgctgttttgattctaagagaaacacaaggcttccct |
39289237 |
T |
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| Q |
316 |
atagttttgacaacaaaccagtaaagaagtcttaaaaccgcctcacttcgacatagtgttaaagctagaatgttaccaatggagaaaagtgtagctcttg |
415 |
Q |
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| T |
39289236 |
atagttttgacaacaaaccagtaaagaagtcttaaaaccgcctcacttcgacatagtgttaaagctagaatgttaccaatggagaaaagtgtagctcttg |
39289137 |
T |
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| Q |
416 |
atttaccatatggaaaatgccctaaagctgaaagagcaagtgctaacatattcaaggttatgcaaaccaagaatagtcctttgtaaactgtg |
507 |
Q |
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| T |
39289136 |
atttaccatatggaaaatgccctaaagctgaaagagcaagtgctaacatattcaaggttatgcaaaccaagaatagtcctttgtaaactgtg |
39289045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 16 - 507
Target Start/End: Complemental strand, 39296416 - 39295928
Alignment:
| Q |
16 |
agaaggataagagctaaccaaccggaaaaacggtggattcgctcgaaaacattgtggtggagatgtcgaataactggaaaagctgcgagcgaagagagtg |
115 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||| ||||| ||||||| |||||||||| |||||||| ||||| |
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| T |
39296416 |
agaaggataagagctaaccaaccggcaaaacggtggattcgctcaaaaacgttgtggtgaagatgacgaataaaaggaaaagctgagagcgaagtgagtg |
39296317 |
T |
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| Q |
116 |
taatgagtgagaggatggcgaatgcaacaccgagtatctccggagaagaattggttttgtcgttgcttttgatcgtgagtacgagagaataaactagcca |
215 |
Q |
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||| ||| ||||| |||||||||||||| ||||| ||||| ||||||| || ||| |||||| || |||||||||| ||||||||||| |||||||| |
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| T |
39296316 |
taaggagcgagagaatggcgaatgcaacgccgagaatctctggagaag---tgttttcatcgttgtttgtgatcgtgagaacgagagaatatactagcca |
39296220 |
T |
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| Q |
216 |
tgctatcgaagaaacgccgcagccactatgaattcctccaagactctgaagaaatgaagttattgctgttttgattctaagagaaacacaaggcttccct |
315 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39296219 |
tgctattgaagaaacaccgcagccactatgaattcctccaatacattgaaggaatgaagttattgctgttttgattctaagagaaacacaaggtttccct |
39296120 |
T |
|
| Q |
316 |
atagttttgacaacaaaccagtaaagaagtcttaaaaccgcctcacttcgacatagtgttaaagctagaatgttaccaatggagaaaagtgtagctcttg |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39296119 |
atagttttgacaacaaaccagtaaagaagtcttaaaaccacctcgcttcgacatagtgttaaagctaggatgttaccaatggagaaaagtgtagctcttg |
39296020 |
T |
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| Q |
416 |
atttaccatatggaaaatgccctaaagctgaaagagcaagtgctaacatattcaaggttatgcaaaccaagaatagtcctttgtaaactgtg |
507 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
39296019 |
atttaccatatggaaaatgccctaaaactgaaagagcaagtgctaacatattcaaggttatgcaaaccaagaacagtcctttgtacactgtg |
39295928 |
T |
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