View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9986_high_5 (Length: 351)
Name: NF9986_high_5
Description: NF9986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9986_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 30343243 - 30343575
Alignment:
| Q |
18 |
gttctccaggtttcaagttctggtatttgg-------catgcaggtacttgacaagagttattctactaaggatcatgtttacaagattcataaaagttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30343243 |
gttctccaggtttcaagttctggtatatggtatctggcatgcaagtacttgacaagagttattctactaaggatcatgtttacaagattcatagaagttt |
30343342 |
T |
|
| Q |
111 |
acaagtcaagtggatacccaaggttacaaccattcaggaacctaaagatctnnnnnnnttgggattggagtccctaattagcaacctgatgagtcacgtt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30343343 |
acaagtcaagtggatacccaaggttacaaccattcgggaacttaaagatctaaaaaaattgggattggagtccctaattagcaacctgatgagtcacgtg |
30343442 |
T |
|
| Q |
211 |
ttggagctgaatcatgatgaggctaaacctaaagccatgtctataacactcagatccaatggcaaaacggtgaaagctctgcaagctgaagatgaagctc |
310 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30343443 |
ttaaagctgaatcatgatgaggctaaacctaaagccatgtctataacactcagatccaatggcaaaacggtgaaagctctgcaagctgaagatgaagctc |
30343542 |
T |
|
| Q |
311 |
cagaggaagctgatgaagatgttgagctctctg |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
30343543 |
cagaggaagctgatgaagatgttgagctctctg |
30343575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 289 - 343
Target Start/End: Original strand, 30347428 - 30347482
Alignment:
| Q |
289 |
ctgcaagctgaagatgaagctccagaggaagctgatgaagatgttgagctctctg |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30347428 |
ctgcaagctgaagatgaagctccagaggaagctgatgaagatgttgagctctctg |
30347482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 28560355 - 28560674
Alignment:
| Q |
18 |
gttctccaggtttcaagttctggtatttggcatgcaggtacttgacaagagttattctactaaggatcatgtttacaagattcataaaagtttacaagtc |
117 |
Q |
| |
|
|||||| |||||||| ||| || ||| | | ||||| ||||||||||| || |||||| |||||||||||||| ||||||||| | |||||||| |||| |
|
|
| T |
28560355 |
gttctctaggtttcatgttttgatatctagaatgcatgtacttgacaaaagctattcttctaaggatcatgttaacaagattctcataagtttactagtc |
28560454 |
T |
|
| Q |
118 |
aagtggatacccaaggttacaaccattcaggaacctaaagatctnnnnnnnttgggattggagtccctaattagcaacctgatgagtcacgttttggagc |
217 |
Q |
| |
|
||||||| |||||||||||| | || || ||| ||||| || | ||||| | |||||||| ||||||| || | ||||||| | || ||| |
|
|
| T |
28560455 |
aagtggaggcccaaggttacatctatccaagaagctaaaaatatgaacaaactgggacttgagtcccttattagcagcccggtgagtcatgagttagagt |
28560554 |
T |
|
| Q |
218 |
tgaatcatgatgaggctaaacctaaagccatgtctataacactcagatccaat-ggcaaaacggtgaaagctctgcaagctgaagatgaagctccagagg |
316 |
Q |
| |
|
||||||||||||| | ||||||||||| || |||||||||||||| |||||| ||||||| ||||||||||||||| ||| |||||||||||| | ||| |
|
|
| T |
28560555 |
tgaatcatgatgatgataaacctaaagtcaagtctataacactcaaatccaaaaggcaaaatggtgaaagctctgcaggctaaagatgaagctctatagg |
28560654 |
T |
|
| Q |
317 |
aagctgatgaagatgttgag |
336 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
28560655 |
aagctgatgaagatgttgag |
28560674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 38 - 336
Target Start/End: Original strand, 23212803 - 23213087
Alignment:
| Q |
38 |
tggtatttggcatgcaggtacttgacaagagttattctactaaggatcatgtttacaagattcataaaagtttacaagtcaagtggatacccaaggttac |
137 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || ||||||||||||||| ||||||||| ||||||||||| | |||||||| || ||| |||| |
|
|
| T |
23212803 |
tggtatttggcatgcatgtacttgacaagagctacataactaaggatcatgttaacaagattcttaaaagtttaccggccaagtggagacgtaagcttac |
23212902 |
T |
|
| Q |
138 |
aaccattcaggaacctaaagatctnnnnnnnttgggattggagtccctaattagcaacctgatgagtcacgttttggagctgaatcatgatgaggctaaa |
237 |
Q |
| |
|
|||||||||||| ||| |||||| | |||| ||| ||||| ||||||||| || || | |||||||||||||||||| |
|
|
| T |
23212903 |
taccattcaggaagctacagatctgaacaagctaggatcggaatccctcattagcaacatg---------------gaattcaatcatgatgaggctaaa |
23212987 |
T |
|
| Q |
238 |
cctaaagccatgtctataacactcagatccaatggcaaaac-ggtgaaagctctgcaagctgaagatgaagctccagaggaagctgatgaagatgttgag |
336 |
Q |
| |
|
|||||| ||| |||||||| |||| |||||| ||||||| ||| |||| |||||| |||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
23212988 |
cctaaatccaagtctataatgctcaaatccaaaggcaaaaatggtcaaaggtctgcaggctgaagatgaagctccaaaggaagctaatgaagatgttgag |
23213087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University