View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9986_low_10 (Length: 318)
Name: NF9986_low_10
Description: NF9986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9986_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 7 - 305
Target Start/End: Complemental strand, 32095899 - 32095601
Alignment:
| Q |
7 |
tttggtggtagtcggtcgtatcttggccattgtatcaagcctgtattagttaaagagctaatatatttatagaattacggtgttggatcaccatgtgccc |
106 |
Q |
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| T |
32095899 |
tttggtggtagtcggtcgtatcttggtcattgtatcaagcctgtattagttaaagagctaatatatttatagaattacggtgttggatcaccatgtgccc |
32095800 |
T |
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| Q |
107 |
catctcatggatttgaatttttgtttactgaaatgaaatggttaacttgtgcagactcagatggaaccggtaattcaggactgcagagagatggtgcacc |
206 |
Q |
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| T |
32095799 |
catctcatggatttgaatttttgtttactgaaatgaaatggttaacttgtgcagactcagatggaaccggtaattcaggactgcagagagatggtgcacc |
32095700 |
T |
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| Q |
207 |
aatttggagatgtaattagaaggtaattcataaagtgaaagacgaagactcttatgaatgtgtaagattttgttttagtgaatatttaatcttgtaact |
305 |
Q |
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| T |
32095699 |
aatttggagatgtaattagaaggtaattcataaagtgaaagacgaagactcttatgaatgtgtaagattttgttttagtgaatatttaatcttgtaact |
32095601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 70 - 169
Target Start/End: Complemental strand, 32091717 - 32091611
Alignment:
| Q |
70 |
tatttatagaattacggtgttggatcaccatgtg-------ccccatctcatggatttgaatttttgtttactgaaatgaaatggttaacttgtgcagac |
162 |
Q |
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| T |
32091717 |
tatttatagaattacggtgttggatcaccatgtggcatgtgccctatctcatggatttgaatttttgtttactgaaatgaaatggttaacctgtgtagac |
32091618 |
T |
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| Q |
163 |
tcagatg |
169 |
Q |
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| T |
32091617 |
tcagatg |
32091611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 210 - 305
Target Start/End: Complemental strand, 32089795 - 32089701
Alignment:
| Q |
210 |
ttggagatgtaattagaaggtaattcataaagtgaaagacgaagactcttatgaatgtgtaagattttgttttagtgaatatttaatcttgtaact |
305 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||| ||||||||||||||||||| |||||||||||| ||||| |
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| T |
32089795 |
ttggagatgtaattagaaggtaattcatat-gtgaaagatgaagactcttatggatgcgtaagattttgttttagtggatatttaatcttttaact |
32089701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 32091814 - 32091741
Alignment:
| Q |
7 |
tttggtggtagtcggtcgtatcttggccattgtatcaagcctgtattagttaaagagctaatatatttatagaa |
80 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
32091814 |
tttggtggtagtcggtcgtatcttggtcaatgtatcaagcctgtatttgttaaagagctaatataattatagaa |
32091741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 29427907 - 29427872
Alignment:
| Q |
64 |
ctaatatatttatagaattacggtgttggatcacca |
99 |
Q |
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| T |
29427907 |
ctaatatattaatagaattacggtgttggatcacca |
29427872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 75 - 152
Target Start/End: Original strand, 41746719 - 41746796
Alignment:
| Q |
75 |
atagaattacggtgttggatcaccatgtgccccatctcatggatttgaatttttgtttactgaaatgaaatggttaac |
152 |
Q |
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|||||||||| |||| |||||||||||||| |||| ||| | ||||||| |||||| ||||||||||||||| ||||| |
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| T |
41746719 |
atagaattacagtgtcggatcaccatgtgctccatttcacgtatttgaacttttgtatactgaaatgaaatgtttaac |
41746796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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