View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9986_low_11 (Length: 289)
Name: NF9986_low_11
Description: NF9986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9986_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 39288737 - 39289002
Alignment:
| Q |
18 |
aacagaagaagcccttttgcaattgaatcaccaacaaagccagagagaactggaacatggctttggattcctcggacaagaaacaattctttcaaaattc |
117 |
Q |
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| T |
39288737 |
aacagaagaagcccttttgcaattgaatcaccaacaaagccagagagaactggaacatggctttggattcctcggacaagaaacaattctttcaaaattc |
39288836 |
T |
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| Q |
118 |
ttcctcagagtcaaggtattagtccaactcggagtcgagcaagtagtcatttttgtgacatcaacattgatgctgatgatgttgagtatgaatttctagc |
217 |
Q |
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| T |
39288837 |
ttcctcagagtcaaggtattagtccaactcggagtcgagcaagtagtcatttttgtgacatcaacattgatgctgatgatgttgagtatgaatttctagc |
39288936 |
T |
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| Q |
218 |
tgaagttcaagacatagaaaataaccaagaaaaagttaaggtactaccaaaaacagaaccaccaaa |
283 |
Q |
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| T |
39288937 |
tgaagttcaagacatagaaaataaccaagaaaaagttaaggtactaccaaaaacagaaccaccaaa |
39289002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 150 - 268
Target Start/End: Original strand, 39295752 - 39295870
Alignment:
| Q |
150 |
agtcgagcaagtagtcatttttgtgacatcaacattgatgctgatgatgttgagtatgaatttctagctgaagttcaagacatagaaaataaccaagaaa |
249 |
Q |
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| T |
39295752 |
agtcgagctagtagtcacttctgtgacatcaacattgatgctgacgatgatgagtatgaatttctagctcaagttcaggacatggaaaataaccaagaga |
39295851 |
T |
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| Q |
250 |
aagttaaggtactaccaaa |
268 |
Q |
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| T |
39295852 |
aagttgaggtactaccaaa |
39295870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 39295632 - 39295724
Alignment:
| Q |
18 |
aacagaagaagcccttttgcaattgaatcaccaacaaagccagagagaactggaacatggctttggattcctc---ggacaagaaacaattct |
107 |
Q |
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| T |
39295632 |
aacaaaagcagcccttttgcaattgaatcaacaacaaagacagagaaagcaggaacatggctttggattcctccatggacaagaaacaattct |
39295724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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