View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9986_low_2 (Length: 550)

Name: NF9986_low_2
Description: NF9986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9986_low_2
NF9986_low_2
[»] chr1 (6 HSPs)
chr1 (11-314)||(51598799-51599103)
chr1 (16-314)||(16962359-16962656)
chr1 (418-528)||(16962760-16962870)
chr1 (418-528)||(51598584-51598694)
chr1 (418-528)||(2972092-2972202)
chr1 (418-528)||(40812234-40812344)
[»] chr7 (4 HSPs)
chr7 (11-314)||(21709521-21709825)
chr7 (418-528)||(21709928-21710038)
chr7 (420-528)||(26025513-26025621)
chr7 (451-528)||(33458695-33458772)
[»] chr8 (8 HSPs)
chr8 (11-314)||(39269808-39270111)
chr8 (11-314)||(39567877-39568179)
chr8 (11-314)||(45377935-45378221)
chr8 (418-528)||(39567664-39567774)
chr8 (418-528)||(45377719-45377829)
chr8 (422-525)||(8096183-8096286)
chr8 (448-528)||(39270189-39270269)
chr8 (443-524)||(13366123-13366204)
[»] chr4 (9 HSPs)
chr4 (11-265)||(16039096-16039348)
chr4 (16-262)||(35059888-35060133)
chr4 (420-528)||(756826-756934)
chr4 (418-528)||(35055942-35056052)
chr4 (420-528)||(702268-702376)
chr4 (420-528)||(770567-770675)
chr4 (421-528)||(16038857-16038964)
chr4 (418-528)||(40145387-40145497)
chr4 (275-314)||(16039070-16039109)
[»] scaffold0031 (2 HSPs)
scaffold0031 (420-528)||(123761-123869)
scaffold0031 (420-478)||(134632-134690)
[»] chr6 (5 HSPs)
chr6 (418-528)||(21283304-21283418)
chr6 (418-528)||(14326523-14326633)
chr6 (418-528)||(14419533-14419643)
chr6 (261-314)||(21283144-21283198)
chr6 (438-524)||(16269374-16269460)
[»] chr2 (1 HSPs)
chr2 (418-528)||(14510150-14510260)
[»] chr3 (3 HSPs)
chr3 (422-525)||(12061021-12061124)
chr3 (418-528)||(23560762-23560872)
chr3 (418-522)||(48866562-48866667)
[»] scaffold0122 (1 HSPs)
scaffold0122 (418-527)||(16857-16966)


Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 314
Target Start/End: Complemental strand, 51599103 - 51598799
Alignment:
Q  11 cacagaaaatcaaaataaaataaaattaagtcttattctttaatgactacaccatcaacacacactttttctttattgtatttgcccatcaaaaccattc 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  51599103 cacaaaaaatcaaaataaaataaaattaagtcttattctttaatgactacaccatcaacacacactttttctttattgtattttcccatcaaaaccattt 51599004  T
Q  111 agtaacaataggcaaactttctcaatcacaaccatgcaatctcatcatcaaggttatgaacaccaattatatgttttgttgttgttcttgtcttgaaccc 210  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51599003 tgtaacaataggcaaactttctcaatcacaaccatgcaatctcatcatcaaggttatgaacaccaattatatgttttgttgttgttcttgtcttgaaccc 51598904  T
Q  211 caattttcattatttgttgatttttaacacaaacgcgcaaacataaagccaacatcagc-tgcatcacaaaaccaacacacatcacacacaaatcttcat 309  Q
    |||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  51598903 caattttcattattcgttgatttttaacacaaacacgcaaacacaaagccaacatcagcgtgcatcacaaaaccaacacacatcacacacaaatcttcat 51598804  T
Q  310 taaca 314  Q
    |||||    
T  51598803 taaca 51598799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 314
Target Start/End: Original strand, 16962359 - 16962656
Alignment:
Q  16 aaaatcaaaataaaataaaattaagtcttattctttaatgactacaccatcaacacacactttttctttattgtatttgcccatcaaaaccattcagtaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||| ||||||||||||||||||    
T  16962359 aaaatcaaaataaaataaaattaagtcttattctttaatgactacaccatcaacacac--ttattctttattgtatttgcctatcaaaaccattcagtaa 16962456  T
Q  116 caataggcaaactttctcaatcacaaccatgcaatctcatcatcaaggttatgaacaccaattatatgttttgttgttgttcttgtcttgaaccccaatt 215  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  16962457 caataagcaaactttctcaatcacaaccatgcaatctcatcatcaaggttatgaacaccaattatatgttttgttgttgttcttgtcttgaacaccaatt 16962556  T
Q  216 ttcattatttgttgatttttaacacaaacgcgcaaacataaagccaacatcagc-tgcatcacaaaaccaacacacatcacacacaaatcttcattaaca 314  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16962557 ttcattatttgttgacttttaacacaaacgcgcaaacacaaagccaacatcagcgtgcatcacaaaaccaacacacatcacacacaaatcttcattaaca 16962656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 418 - 528
Target Start/End: Original strand, 16962760 - 16962870
Alignment:
Q  418 ctcattttcgaatgccaatcattcatcatcaatatcaatcctttcgaattccaatctaaacccattttatgatctaatctaaattcttccaaatcccaat 517  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||  ||||||||||||||||||||||||||||||    
T  16962760 ctcatttttgaatgccaatcattcatcatcaatatcaatcctttcaaatttcaatctaaacccatttttggatctaatctaaattcttccaaatcccaat 16962859  T
Q  518 ctaaacccatt 528  Q
    |||||||||||    
T  16962860 ctaaacccatt 16962870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 418 - 528
Target Start/End: Complemental strand, 51598694 - 51598584
Alignment:
Q  418 ctcattttcgaatgccaatcattcatcatcaatatcaatcctttcgaattccaatctaaacccattttatgatctaatctaaattcttccaaatcccaat 517  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||  ||||||||||||||||||||||||||||||    
T  51598694 ctcattttcgaatgccaatcattcatcatcaatagcaatcctttcaaattccaatctaaatccatttttggatctaatctaaattcttccaaatcccaat 51598595  T
Q  518 ctaaacccatt 528  Q
    |||||| ||||    
T  51598594 ctaaactcatt 51598584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 418 - 528
Target Start/End: Original strand, 2972092 - 2972202
Alignment:
Q  418 ctcattttcgaatgccaatcattcatcatcaatatcaatcctttcgaattccaatctaaacccattttatgatctaatctaaattcttccaaatcccaat 517  Q
    ||||||||||||| |||||||||||||||||| |||||||||||| || |||||||||||||||||||  |||||||||||||  ||||||||| |||||    
T  2972092 ctcattttcgaattccaatcattcatcatcaacatcaatcctttcaaagtccaatctaaacccatttttggatctaatctaaacccttccaaattccaat 2972191  T
Q  518 ctaaacccatt 528  Q
     |||| |||||    
T  2972192 ataaatccatt 2972202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 418 - 528
Target Start/End: Complemental strand, 40812344 - 40812234
Alignment:
Q  418 ctcattttcgaatgccaatcattcatcatcaatatcaatcctttcgaattccaatctaaacccattttatgatctaatctaaattcttccaaatcccaat 517  Q
    ||||||||||||| |||||  ||||||||||| ||||||||||||  ||||||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  40812344 ctcattttcgaattccaattcttcatcatcaacatcaatcctttcacattccaatctaaacctatttttggatctaatctaaatccttccaaatcccaat 40812245  T
Q  518 ctaaacccatt 528  Q
     ||||||||||    
T  40812244 ttaaacccatt 40812234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 265; Significance: 1e-147; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 11 - 314
Target Start/End: Original strand, 21709521 - 21709825
Alignment:
Q  11 cacagaaaatcaaaataaaataaaattaagtcttattctttaatgactacaccatcaacacacactttttctttattgtatttgcccatcaaaaccattc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  21709521 cacagaaaatcaaaataaaataaaattaagtcttattctttaattactacaccatcaacacacactttttctttattgtattttcccatcaaaaccattt 21709620  T
Q  111 agtaacaataggcaaactttctcaatcacaaccatgcaatctcatcatcaaggttatgaacaccaattatatgttttgttgttgttcttgtcttgaaccc 210  Q
     ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21709621 tgtaacaataggaaaactttctcaatcacaaccatgcaatctcatcatcaaggttatgaacaccaattatatgttttgttgttgttcttgtcttgaaccc 21709720  T
Q  211 caattttcattatttgttgatttttaacacaaacgcgcaaacataaagccaacatcagc-tgcatcacaaaaccaacacacatcacacacaaatcttcat 309  Q
    |||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21709721 caattttcattattcgttgatttttaacacaaacacgcaaacacaaagccaacatcagcgtgcatcacaaaaccaacacacatcacacacaaatcttcat 21709820  T
Q  310 taaca 314  Q
    |||||    
T  21709821 taaca 21709825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 418 - 528
Target Start/End: Original strand, 21709928 - 21710038
Alignment:
Q  418 ctcattttcgaatgccaatcattcatcatcaatatcaatcctttcgaattccaatctaaacccattttatgatctaatctaaattcttccaaatcccaat 517  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  21709928 ctcattttcgaatgccaatcattcatcatcaatagcaatcctttcaaattccaatctaaacccatttttggatctaatctaaattcttccaaatcccaat 21710027  T
Q  518 ctaaacccatt 528  Q
    |||||||||||    
T  21710028 ctaaacccatt 21710038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 420 - 528
Target Start/End: Complemental strand, 26025621 - 26025513
Alignment:
Q  420 cattttcgaatgccaatcattcatcatcaatatcaatcctttcgaattccaatctaaacccattttatgatctaatctaaattcttccaaatcccaatct 519  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  26025621 cattttcgaatgccaatcattcatcatcaatagcaatcctttcaaattccaatctaaacccatttttggatctaatctaaattcttccaaatcccaatct 26025522  T
Q  520 aaacccatt 528  Q
    |||| ||||    
T  26025521 aaactcatt 26025513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 451 - 528
Target Start/End: Original strand, 33458695 - 33458772
Alignment:
Q  451 atcaatcctttcgaattccaatctaaacccattttatgatctaatctaaattcttccaaatcccaatctaaacccatt 528  Q
    |||||| ||||| ||||||||||||||||||||||  ||||||||||||| |||||||||| ||||| ||||| ||||    
T  33458695 atcaattctttcaaattccaatctaaacccatttttggatctaatctaaactcttccaaattccaatttaaactcatt 33458772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 314
Target Start/End: Original strand, 39269808 - 39270111
Alignment:
Q  11 cacagaaaatcaaaataaaataaaattaagtcttattctttaatgactacaccatcaacacacactttttctttattgtatttgcccatcaaaaccattc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39269808 cacagaaaatcaaaataaaataaaattaagtcttattctttaacgactacaccaacaacacacactttttctttattgtatttgcccatcaaaaccattc 39269907  T
Q  111 agtaacaataggcaaactttctcaatcacaaccatgcaatctcatcatcaaggttatgaacaccaattatatgttttgttgttgttcttgtcttgaaccc 210  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39269908 tgtaacaataggcaaactttctcaatcacaaccatgcaatctcatcatcaaggttatgaacgccaattatatgttttgttgttgttcttgtcttgaaccc 39270007  T
Q  211 caattttcattatttgttgatttttaacacaaacgcgcaaacataaagccaacatcagc-tgcatcacaaaaccaacacacatcacacacaaatcttcat 309  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||    
T  39270008 caattttcattatttgttgatttttaacacaaacacgcaaacacaaagccaacatcagcgtgca-cacaaaaccaacacacatcacacacaaattttcat 39270106  T
Q  310 taaca 314  Q
    |||||    
T  39270107 taaca 39270111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 11 - 314
Target Start/End: Complemental strand, 39568179 - 39567877
Alignment:
Q  11 cacagaaaatcaaaataaaataaaattaagtcttattctttaatgactacaccatcaacacacactttttctttattgtatttgcccatcaaaaccattc 110  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  || |||||||||||||||||| |||||||||||||    
T  39568179 cacaaaaaatcaaaataaaataaaattaagtcttattctttaatgactacaccatcaacatac--ttattctttattgtatttgcctatcaaaaccattc 39568082  T
Q  111 agtaacaataggcaaactttctcaatcacaaccatgcaatctcatcatcaaggttatgaacaccaattatatgttttgttgttgttcttgtcttgaaccc 210  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39568081 agtaacaatatgcaaactttctcaatcacaaccatgcaatctcatcatcaaggttatgaacaccaattatatgttttgttgttgttcttgtcttgaaccc 39567982  T
Q  211 caattttcattatttgttgatttttaacacaaacgcgcaaacataaagccaacatcagc-tgcatcacaaaaccaacacacatcacacacaaatcttcat 309  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39567981 caattttcattatttgttgacttttaacacaaacgcgcaaacacaaagccaacatcagcgtgcatcacaaaaccaacacacatcacacacaaatcttcat 39567882  T
Q  310 taaca 314  Q
    |||||    
T  39567881 taaca 39567877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 11 - 314
Target Start/End: Complemental strand, 45378221 - 45377935
Alignment:
Q  11 cacagaaaatcaaaataaaataaaatt-aagtcttattctttaatgactacaccatcaacacacactttttctttattgtatttgcccatcaaaaccatt 109  Q
    |||| ||||||||||| |||| ||||| |||||||||| ||||||||||||||||| |||||||  || |||||||||||||||||| ||||||| ||||    
T  45378221 cacaaaaaatcaaaattaaattaaatttaagtcttattttttaatgactacaccatgaacacac--ttattctttattgtatttgcctatcaaaatcatt 45378124  T
Q  110 cagtaacaataggcaaactttctcaatcacaaccatgcaatctcatcatcaaggttatgaacaccaattatatgttttgttgttgttcttgtcttgaacc 209  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45378123 cagtaacaataggcaaactttctcaatcataaccatgcaat-tcatcatcaaggttatgaacaccaattatatgttttgtcgttgttcttgtcttgaacc 45378025  T
Q  210 ccaattttcattatttgttgatttttaacacaaacgcgcaaacataaagccaacatcag-ctgcatcacaaaaccaacacacatcacacacaaatcttca 308  Q
    |||||||||||||||| ||||||||||||||              ||||||||||||||  |||||||||||||||||||||||  ||||||||||||||    
T  45378024 ccaattttcattatttattgatttttaacac--------------aaagccaacatcagtgtgcatcacaaaaccaacacacat--cacacaaatcttca 45377941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 418 - 528
Target Start/End: Complemental strand, 39567774 - 39567664
Alignment:
Q  418 ctcattttcgaatgccaatcattcatcatcaatatcaatcctttcgaattccaatctaaacccattttatgatctaatctaaattcttccaaatcccaat 517  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  39567774 ctcatttttgaatgccaatcattcatcatcaatatcaatcctttcaaattccaatctaaacccatttttggatctaatctaaattcttccaaatcccaat 39567675  T
Q  518 ctaaacccatt 528  Q
    |||||||||||    
T  39567674 ctaaacccatt 39567664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 418 - 528
Target Start/End: Complemental strand, 45377829 - 45377719
Alignment:
Q  418 ctcattttcgaatgccaatcattcatcatcaatatcaatcctttcgaattccaatctaaacccattttatgatctaatctaaattcttccaaatcccaat 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||  |||||||| ||||||||| |||||||||||    
T  45377829 ctcattttcgaatgccaatcattcatcatcaatatcaatcctttcaaattccaatctaaactcatttttggatctaatttaaattctttcaaatcccaat 45377730  T
Q  518 ctaaacccatt 528  Q
    | |||||||||    
T  45377729 ccaaacccatt 45377719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 422 - 525
Target Start/End: Complemental strand, 8096286 - 8096183
Alignment:
Q  422 ttttcgaatgccaatcattcatcatcaatatcaatcctttcgaattccaatctaaacccattttatgatctaatctaaattcttccaaatcccaatctaa 521  Q
    |||||||||  ||||| ||||||||||| ||||||||||||  ||||||||||||| |||||||  ||||||||||||| ||||||||||||||||||||    
T  8096286 ttttcgaattacaatccttcatcatcaacatcaatcctttcatattccaatctaaatccatttttggatctaatctaaactcttccaaatcccaatctaa 8096187  T
Q  522 accc 525  Q
    ||||    
T  8096186 accc 8096183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 448 - 528
Target Start/End: Original strand, 39270189 - 39270269
Alignment:
Q  448 aatatcaatcctttcgaattccaatctaaacccattttatgatctaatctaaattcttccaaatcccaatctaaacccatt 528  Q
    |||| |||||||||| ||||||||||||||| ||||||   ||||||||||||||||||||||||||||||||||||||||    
T  39270189 aatagcaatcctttcaaattccaatctaaactcatttttgaatctaatctaaattcttccaaatcccaatctaaacccatt 39270269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 443 - 524
Target Start/End: Original strand, 13366123 - 13366204
Alignment:
Q  443 tcatcaatatcaatcctttcgaattccaatctaaacccattttatgatctaatctaaattcttccaaatcccaatctaaacc 524  Q
    ||||||| ||||||||||||  |||||||||||||| ||||||  |||||||||||||  ||||||||| ||||||||||||    
T  13366123 tcatcaacatcaatcctttcatattccaatctaaactcatttttggatctaatctaaacccttccaaattccaatctaaacc 13366204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 16039348 - 16039096
Alignment:
Q  11 cacagaaaatcaaaataaaataaaattaagtcttattctttaatgactacaccatcaacacacactttttctttattgtatttgcccatcaaaaccattc 110  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  || |||||||||||||||||| |||||||||||||    
T  16039348 cacaaaaaatcaaaataaaataaaattaagtcttattctttaatgactacaccatcaacatac--ttattctttattgtatttgcctatcaaaaccattc 16039251  T
Q  111 agtaacaataggcaaactttctcaatcacaaccatgcaatctcatcatcaaggttatgaacaccaattatatgttttgttgttgttcttgtcttgaaccc 210  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16039250 agtaacaataggcaaactttgtcaatcacaaccatgcaatctcatcatcaatgttatgaacaccaattatatgttttgttgttgttcttgtcttgaaccc 16039151  T
Q  211 caattttcattatttgttgatttttaacacaaacgcgcaaacataaagccaacat 265  Q
    |||||||||||||||||||| |||||||| ||||||||||||| ||| |||||||    
T  16039150 caattttcattatttgttgacttttaacataaacgcgcaaacacaaaaccaacat 16039096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 16 - 262
Target Start/End: Complemental strand, 35060133 - 35059888
Alignment:
Q  16 aaaatcaaaataaaataaaattaagtcttattctttaatgactacaccatcaacacacactttttctttattgtatttgcccatcaaaaccattcagtaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||  ||||||||||||||||| ||| ||||||||||||||    
T  35060133 aaaatcaaaataaaataaaattaagtcttattctttaatgactacaccatcaacatac--ttactctttattgtatttgcctatccaaaccattcagtaa 35060036  T
Q  116 caataggcaaa-ctttctcaatcacaaccatgcaatctcatcatcaaggttatgaacaccaattatatgttttgttgttgttcttgtcttgaaccccaat 214  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35060035 caataggcaaaactttctcaatcacaaccatgcaatctcatcatcaaggttatgaacaccaattatatgttttgttgttgttcttgtcttgaaccccaat 35059936  T
Q  215 tttcattatttgttgatttttaacacaaacgcgcaaacataaagccaa 262  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||    
T  35059935 tttcattatttgttgacttttaacacaaacgcgcaaacacaaagccaa 35059888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 420 - 528
Target Start/End: Original strand, 756826 - 756934
Alignment:
Q  420 cattttcgaatgccaatcattcatcatcaatatcaatcctttcgaattccaatctaaacccattttatgatctaatctaaattcttccaaatcccaatct 519  Q
    |||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  756826 cattttcgaatgtcaatcattcatcatcaatagcaatcctttcaaattccaatctaaacccatttttggatctaatctaaattcttccaaatcccaatct 756925  T
Q  520 aaacccatt 528  Q
    |||| ||||    
T  756926 aaactcatt 756934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 418 - 528
Target Start/End: Complemental strand, 35056052 - 35055942
Alignment:
Q  418 ctcattttcgaatgccaatcattcatcatcaatatcaatcctttcgaattccaatctaaacccattttatgatctaatctaaattcttccaaatcccaat 517  Q
    |||||||| ||||| |||||||||||||||||||||||||||||| ||||| |||||||||| |||||  ||||||||||||||||||||||||||||||    
T  35056052 ctcatttttgaatgtcaatcattcatcatcaatatcaatcctttcaaattctaatctaaacctatttttggatctaatctaaattcttccaaatcccaat 35055953  T
Q  518 ctaaacccatt 528  Q
    |||||||||||    
T  35055952 ctaaacccatt 35055942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 420 - 528
Target Start/End: Complemental strand, 702376 - 702268
Alignment:
Q  420 cattttcgaatgccaatcattcatcatcaatatcaatcctttcgaattccaatctaaacccattttatgatctaatctaaattcttccaaatcccaatct 519  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||  |||||||||||||||||||||||||| |||||    
T  702376 cattttcgaatgccaatcattcatcatcaatagcaatcctttcaaattccaatctaaactcatttttggatctaatctaaattcttccaaatcctaatct 702277  T
Q  520 aaacccatt 528  Q
    |||| ||||    
T  702276 aaactcatt 702268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 420 - 528
Target Start/End: Complemental strand, 770675 - 770567
Alignment:
Q  420 cattttcgaatgccaatcattcatcatcaatatcaatcctttcgaattccaatctaaacccattttatgatctaatctaaattcttccaaatcccaatct 519  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||  |||||||||||||||||||||||||| |||||    
T  770675 cattttcgaatgccaatcattcatcatcaatagcaatcctttcaaattccaatctaaactcatttttggatctaatctaaattcttccaaatcctaatct 770576  T
Q  520 aaacccatt 528  Q
    |||| ||||    
T  770575 aaactcatt 770567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 421 - 528
Target Start/End: Complemental strand, 16038964 - 16038857
Alignment:
Q  421 attttcgaatgccaatcattcatcatcaatatcaatcctttcgaattccaatctaaacccattttatgatctaatctaaattcttccaaatcccaatcta 520  Q
    ||||| |||||||||||||||||| ||||||||||||||||| ||||| |||||||||| |||||  |||||||||||||||||||||||||||||||||    
T  16038964 atttttgaatgccaatcattcatcgtcaatatcaatcctttcaaattcaaatctaaaccgatttttggatctaatctaaattcttccaaatcccaatcta 16038865  T
Q  521 aacccatt 528  Q
    ||||||||    
T  16038864 aacccatt 16038857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 418 - 528
Target Start/End: Complemental strand, 40145497 - 40145387
Alignment:
Q  418 ctcattttcgaatgccaatcattcatcatcaatatcaatcctttcgaattccaatctaaacccattttatgatctaatctaaattcttccaaatcccaat 517  Q
    ||||||||||||| |||||| ||||||||||  |||||||||||| |||||||||||||||||||||   |||||||| |||| |||||||||| |||||    
T  40145497 ctcattttcgaattccaatccttcatcatcagcatcaatcctttcaaattccaatctaaacccatttatggatctaatttaaactcttccaaattccaat 40145398  T
Q  518 ctaaacccatt 528  Q
     ||||| ||||    
T  40145397 ttaaactcatt 40145387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 275 - 314
Target Start/End: Complemental strand, 16039109 - 16039070
Alignment:
Q  275 cacaaaaccaacacacatcacacacaaatcttcattaaca 314  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  16039109 cacaaaaccaacatacatcacacacaaatcttcattaaca 16039070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 420 - 528
Target Start/End: Original strand, 123761 - 123869
Alignment:
Q  420 cattttcgaatgccaatcattcatcatcaatatcaatcctttcgaattccaatctaaacccattttatgatctaatctaaattcttccaaatcccaatct 519  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  123761 cattttcgaatgccaatcattcatcatcaatagcaatcctttcaaattccaatctaaacccatttttgaatctaatctaaattcttccaaatcccaatct 123860  T
Q  520 aaacccatt 528  Q
    |||| ||||    
T  123861 aaactcatt 123869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 420 - 478
Target Start/End: Original strand, 134632 - 134690
Alignment:
Q  420 cattttcgaatgccaatcattcatcatcaatatcaatcctttcgaattccaatctaaac 478  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  134632 cattttcgaatgccaatcattcatcatcaatagcaatcctttcaaattccaatctaaac 134690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 418 - 528
Target Start/End: Original strand, 21283304 - 21283418
Alignment:
Q  418 ctcattttcgaatgccaatcattcatcatcaatatcaat----cctttcgaattccaatctaaacccattttatgatctaatctaaattcttccaaatcc 513  Q
    |||||||||||||| ||||||||||| ||||||| ||||    |||||| |||||||||||||||||| |||  ||||||||||||||||||||||||||    
T  21283304 ctcattttcgaatgtcaatcattcattatcaatagcaatatatcctttcaaattccaatctaaacccaattttggatctaatctaaattcttccaaatcc 21283403  T
Q  514 caatctaaacccatt 528  Q
    |||||||||||||||    
T  21283404 caatctaaacccatt 21283418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 418 - 528
Target Start/End: Original strand, 14326523 - 14326633
Alignment:
Q  418 ctcattttcgaatgccaatcattcatcatcaatatcaatcctttcgaattccaatctaaacccattttatgatctaatctaaattcttccaaatcccaat 517  Q
    ||||||||||||| |||||| ||||||||||  || |||||||||  |||||||||||||||||||||  |||||||||||||  |||||||||||||||    
T  14326523 ctcattttcgaattccaatccttcatcatcagcattaatcctttcatattccaatctaaacccatttttggatctaatctaaacacttccaaatcccaat 14326622  T
Q  518 ctaaacccatt 528  Q
    |||||||||||    
T  14326623 ctaaacccatt 14326633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 418 - 528
Target Start/End: Original strand, 14419533 - 14419643
Alignment:
Q  418 ctcattttcgaatgccaatcattcatcatcaatatcaatcctttcgaattccaatctaaacccattttatgatctaatctaaattcttccaaatcccaat 517  Q
    ||||||||||||| |||||| ||||||||||  || |||||||||  |||||||||||||||||||||  |||||||||||||  |||||||||||||||    
T  14419533 ctcattttcgaattccaatccttcatcatcagcattaatcctttcatattccaatctaaacccatttttggatctaatctaaacacttccaaatcccaat 14419632  T
Q  518 ctaaacccatt 528  Q
    |||||||||||    
T  14419633 ctaaacccatt 14419643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 261 - 314
Target Start/End: Original strand, 21283144 - 21283198
Alignment:
Q  261 aacatcagc-tgcatcacaaaaccaacacacatcacacacaaatcttcattaaca 314  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21283144 aacatcagcgtgcatcacaaaaccaacacacatcacacacaaatcttcattaaca 21283198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 438 - 524
Target Start/End: Complemental strand, 16269460 - 16269374
Alignment:
Q  438 attcatcatcaatatcaatcctttcgaattccaatctaaacccattttatgatctaatctaaattcttccaaatcccaatctaaacc 524  Q
    |||||||||| | |||||||||||| ||||||||| |||||  |||||  |||||||||||||  ||| ||||| ||||||||||||    
T  16269460 attcatcatctacatcaatcctttcaaattccaatataaacaaatttttagatctaatctaaacccttacaaattccaatctaaacc 16269374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 418 - 528
Target Start/End: Complemental strand, 14510260 - 14510150
Alignment:
Q  418 ctcattttcgaatgccaatcattcatcatcaatatcaatcctttcgaattccaatctaaacccattttatgatctaatctaaattcttccaaatcccaat 517  Q
    ||||||||| ||| |||||| |||| |||||| ||||||||||||  |||||||||||||| ||||||  |||||||||||||| ||||||| |||||||    
T  14510260 ctcattttcaaattccaatctttcaccatcaacatcaatcctttcatattccaatctaaactcatttttggatctaatctaaatccttccaactcccaat 14510161  T
Q  518 ctaaacccatt 528  Q
    |||||||||||    
T  14510160 ctaaacccatt 14510150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 422 - 525
Target Start/End: Original strand, 12061021 - 12061124
Alignment:
Q  422 ttttcgaatgccaatcattcatcatcaatatcaatcctttcgaattccaatctaaacccattttatgatctaatctaaattcttccaaatcccaatctaa 521  Q
    |||||||||  ||||| ||||||||||| ||||||||||||  |||| |||||||| |||||||  ||||||||||||| ||||||||||||||||||||    
T  12061021 ttttcgaattacaatccttcatcatcaacatcaatcctttcatattctaatctaaatccatttttggatctaatctaaactcttccaaatcccaatctaa 12061120  T
Q  522 accc 525  Q
    ||||    
T  12061121 accc 12061124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 418 - 528
Target Start/End: Complemental strand, 23560872 - 23560762
Alignment:
Q  418 ctcattttcgaatgccaatcattcatcatcaatatcaatcctttcgaattccaatctaaacccattttatgatctaatctaaattcttccaaatcccaat 517  Q
    ||||||||||||| ||||||||||||||| | ||| |||||||||  |||||||||||||||||||||  |||||||||||||  ||| ||||| |||||    
T  23560872 ctcattttcgaattccaatcattcatcattagtattaatcctttcatattccaatctaaacccatttttggatctaatctaaacactttcaaattccaat 23560773  T
Q  518 ctaaacccatt 528  Q
    | |||||||||    
T  23560772 ccaaacccatt 23560762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 418 - 522
Target Start/End: Original strand, 48866562 - 48866667
Alignment:
Q  418 ctcattttcgaatgccaatcattcatcatcaatatcaatcctttcgaattccaatct-aaacccattttatgatctaatctaaattcttccaaatcccaa 516  Q
    ||||||||||||| |||||| ||||||||||| |||||||||||| |||| |||||| |||||||||||  |||||||||||||| ||| |||||  |||    
T  48866562 ctcattttcgaattccaatccttcatcatcaacatcaatcctttcaaatttcaatctaaaacccatttttggatctaatctaaatcctttcaaatttcaa 48866661  T
Q  517 tctaaa 522  Q
    ||||||    
T  48866662 tctaaa 48866667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 418 - 527
Target Start/End: Complemental strand, 16966 - 16857
Alignment:
Q  418 ctcattttcgaatgccaatcattcatcatcaatatcaatcctttcgaattccaatctaaacccattttatgatctaatctaaattcttccaaatcccaat 517  Q
    ||||||||  ||| |||||| ||||||||||||||||||||||||  |||||||||||||| ||||||  ||| |||||||||  |||||||||||||||    
T  16966 ctcatttttaaattccaatccttcatcatcaatatcaatcctttcatattccaatctaaactcatttttggatgtaatctaaacccttccaaatcccaat 16867  T
Q  518 ctaaacccat 527  Q
     || ||||||    
T  16866 atatacccat 16857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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