View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9986_low_4 (Length: 462)
Name: NF9986_low_4
Description: NF9986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9986_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 5 - 456
Target Start/End: Complemental strand, 24030945 - 24030494
Alignment:
| Q |
5 |
cattatcgatgtatctttaaaccaagaaaatgggaaagttaaaggatttacctttcttttggccatgcgcctgtcattgccgccatacttcctgttaaat |
104 |
Q |
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| T |
24030945 |
cattatcaatgtatctttaaaccaagaaaatgggaaagttaaaggatttacctttcttttggccgtgtgcctgtcattgccgccatacttcctgttaaat |
24030846 |
T |
|
| Q |
105 |
acgtctatttgtctgctcaaaaactcaaatttctctttatccgatcccaacttcaagaatagattaccataggaagccttttcaaggaagagatgctcaa |
204 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24030845 |
acgtctatttgtctgttcaaaaactcaaatttctctttatccgatcccaacttcaagaatagattaccataggaagccttttcaaggaagagatgctcaa |
24030746 |
T |
|
| Q |
205 |
gttccccaagctcttccattgtgaaatcatagttagttgcgatccttttaagatcaaatgttgattccactttggggtcgaatgacctggcttgcatagt |
304 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
24030745 |
gttccccaagctcttccattatgaaatcatagttagttgcgatccttttaagatcaaatgttgattccactttggggtcgaatgacctggcttgcacgg- |
24030647 |
T |
|
| Q |
305 |
cattaaatacccccacttatcgaagattcaccatcacctgtttaagttttaatcaatatgtaccaaaatgaacatttgattacaataaaaatcataaatt |
404 |
Q |
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| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24030646 |
-aaacaatacccccacttatcgaagattcgccatcacctgttcaagttttaatcaatatgtaccaaaatgaacatttgattacaataaaaatcataaatt |
24030548 |
T |
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| Q |
405 |
taga--agagatatatacccctgctattacaatgttgaaatacacctttatttt |
456 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24030547 |
tagaagagagatatatacccctgctgttacaatgttgaaatacacctttatttt |
24030494 |
T |
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