View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9986_low_5 (Length: 402)
Name: NF9986_low_5
Description: NF9986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9986_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 3 - 387
Target Start/End: Original strand, 34885187 - 34885571
Alignment:
| Q |
3 |
aatgaggaagagtaaacgaaggagcactatacgaaatgaaatgaacattggaaccgttaaaagcgtcatgaacagcatcaaaagaagattgatgagcgaa |
102 |
Q |
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| T |
34885187 |
aatgagaaagagtaaacgaaggatcgctatacgaaatgaaatgaacattggaaccgttaaaagcgtcatgaacagcatcaaaagaagattgatgagcgaa |
34885286 |
T |
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| Q |
103 |
gatatgaatctgacaagggatacggaatttgttattgttagagcggggttgaacgatggcttcgacgtggatgatgtgagcgtcgaggagaggagcgaga |
202 |
Q |
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| T |
34885287 |
gatatgaatctgacaagggatacggaatttgttattgttagagcggggttgaacgatggcttcgacgtggatgatgtgagcgtcgaggagaggagcgaga |
34885386 |
T |
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| Q |
203 |
gcggaggcgacggagcgttcgatgtaaccgacttggagcgtttgagtgttgaggactttgatggcgttggaatcgtatgggtttaaaggttcgcggatta |
302 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34885387 |
gcggaggcaacggcgcgttcgatgtaaccgacttggagcgtttgagtgttgaggactttgatggcgttggaatcgtatgggtttaaaggttcgcggatta |
34885486 |
T |
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| Q |
303 |
agccgaggatttcgcgaccggtgatggtgccggagtagtgtttaatgccgacgatgttggccattacgaaaccggcgaggtaggt |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34885487 |
agccgaggatttcgcgaccggtgatggtgccggagtagtgtttaatgccgacgatgttggccattacgaaaccggcgaggtaggt |
34885571 |
T |
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