View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9986_low_6 (Length: 380)
Name: NF9986_low_6
Description: NF9986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9986_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 867381 - 867738
Alignment:
| Q |
18 |
ttaactgattaagttaaaaaaccaaaatgaaacttcttaaaattaggagaccaacttgaaattcaaagaaaagttaagggatcaaaagtaaattgaatca |
117 |
Q |
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| T |
867381 |
ttaactgattaagttaaaaaaccaaaatgaaacttcttaaaattaggagaccaacttgaaattcaaagaaaagttaagggatcaaaagtaaattgaatca |
867480 |
T |
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| Q |
118 |
aattcaaattaaaacacaannnnnnnattgttacaaatgagaaaaatgagaaaacaagacagagaaactagggcttaatgccttaaaaacttgtgcccat |
217 |
Q |
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| T |
867481 |
aattcaaattaaaacacaatttttttattgttacaaatgagaaaaatgagaaaacaagacagagaaactagggcttaatgccttaaaaacttgtgcccat |
867580 |
T |
|
| Q |
218 |
ggcatcaacaagcaataaaggtgaatcaagaaacaccaaatgatcattgctttgggcatccatctttgcaaggaagtcatcgcattggttcccttttcca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
867581 |
ggcatcaacaagcaataaaggtgaatcaagaaacaccaaatcatcattgctttgggcacccatctttgcaaggaagtcatcgcattggttcccttttcca |
867680 |
T |
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| Q |
318 |
aaagtacagtgtaacataatcttgatcagcaaaatttcataaccaaacctttgcttct |
375 |
Q |
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| T |
867681 |
aaagtacagtgtaacataatcttgatcagccaaatttcataaccaaacctttgattct |
867738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 21306649 - 21306600
Alignment:
| Q |
54 |
ttaaaattaggagaccaacttgaaattcaaagaaaagttaagggatcaaa |
103 |
Q |
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| T |
21306649 |
ttaaaattatgagaccaaaatgaaattcaaaaataagttaagggatcaaa |
21306600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 21314487 - 21314438
Alignment:
| Q |
54 |
ttaaaattaggagaccaacttgaaattcaaagaaaagttaagggatcaaa |
103 |
Q |
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||||||||| |||||||| ||||||||||| | |||||||||||||||| |
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| T |
21314487 |
ttaaaattatgagaccaaaatgaaattcaaaaataagttaagggatcaaa |
21314438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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