View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9987_high_7 (Length: 207)
Name: NF9987_high_7
Description: NF9987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9987_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 165
Target Start/End: Original strand, 8103381 - 8103533
Alignment:
| Q |
13 |
caaagggatgaatgatgaaggagtcgttgttgagttactcatgtttcaaagcatcaattccgtgatgttaatggtgcctctattatgcatcctttaactg |
112 |
Q |
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| T |
8103381 |
caaagggatgaatgatgaaggagtcgttgttgagttactcatgtttcaaagcatcaattccgtgatgttaatggtgcctctattatgcatccttcaactg |
8103480 |
T |
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| Q |
113 |
tcacaattgaagctcaaaatgatccagaaacatcattaattaacatctcgacg |
165 |
Q |
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| T |
8103481 |
tcacagttgaagctcaaaatgatccataaacatcattaattaacatcttgacg |
8103533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 40 - 151
Target Start/End: Original strand, 8101931 - 8102034
Alignment:
| Q |
40 |
tgttgagttactcatgtttcaaagcatcaattccgtgatgttaatggtgcctctattatgcatcctttaactgtcacaattgaagctcaaaatgatccag |
139 |
Q |
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| T |
8101931 |
tgttgagttactcatgtttcaaagcatcacttccgtgaagttaatggtgcctctattatgcatccttcaactgt--------aagctcaaagtgatccag |
8102022 |
T |
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| Q |
140 |
aaacatcattaa |
151 |
Q |
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| T |
8102023 |
aaacatcattaa |
8102034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 24916634 - 24916684
Alignment:
| Q |
13 |
caaagggatgaatgatgaaggagtcgttgttgagttactcatgtttcaaag |
63 |
Q |
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| T |
24916634 |
caaagggatgaatgatgaaggagatgttgctgagttactcaggtttcaaag |
24916684 |
T |
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