View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9987_low_1 (Length: 389)

Name: NF9987_low_1
Description: NF9987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9987_low_1
NF9987_low_1
[»] chr2 (2 HSPs)
chr2 (14-373)||(25290511-25290871)
chr2 (140-228)||(19251002-19251089)
[»] chr3 (3 HSPs)
chr3 (140-334)||(9443534-9443728)
chr3 (135-193)||(744434-744492)
chr3 (135-193)||(748364-748422)
[»] chr8 (2 HSPs)
chr8 (140-373)||(4282138-4282372)
chr8 (166-244)||(25187880-25187958)
[»] chr4 (1 HSPs)
chr4 (124-295)||(19724198-19724369)
[»] chr5 (2 HSPs)
chr5 (140-310)||(15063000-15063174)
chr5 (140-247)||(28800958-28801065)
[»] chr1 (1 HSPs)
chr1 (269-338)||(17193029-17193098)
[»] chr6 (1 HSPs)
chr6 (140-247)||(7859337-7859443)


Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 14 - 373
Target Start/End: Complemental strand, 25290871 - 25290511
Alignment:
Q  14 cacagaccgcaccactagcaaaactgtcaggagcataacgcagccaaaaacagaaaaaacagcagcactgaaagacaacacagcagtcttataataacag 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25290871 cacagaccgcaccactagcaaaactgtcaggagcataacgcagccaaaaacagaaaaaacagcagcactgaaagacaacacaacagtcttataataacag 25290772  T
Q  114 ctccaaaggtaaaaa-caccggaaaaactatctaagtaagcactcccgagggttccaactccactcataatacaaacacgagccgatttttaacttactc 212  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25290771 ctccaaaggtaaaaaacaccggaaaaactatctaagtaagcactcccgagggttccaactccactcataatacaaacacgagccgatttttaacttactc 25290672  T
Q  213 atactctaataccaagctagaatcttgatattctcaatgaaaatatctatatccatcacaccattattgaaaataatctcattcctttgcttccaaatca 312  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||    
T  25290671 atactccaataccaagctagaatcttgatcttctcaatgaaaatatctacattcaccacaccattattgaaaataatctcattcctttgcttccaaatca 25290572  T
Q  313 ctcaaatagaggcaagccaaatcaaacaaaacccccttcttaatttcttagaagtagcctc 373  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  25290571 ctcaaatagaggcaagccaaatcaaacaaaatccccttcttaatttcttagaaatagcctc 25290511  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 19251002 - 19251089
Alignment:
Q  140 ctatctaagtaagcactcccgagggttccaactccactcataatacaaacacgagccgatttttaacttactcatactctaataccaag 228  Q
    ||||||||||||||| | |||||||||| ||| ||||| |||||||||||||  |  | |||| ||||||||||||||| || ||||||    
T  19251002 ctatctaagtaagcattaccgagggttctaacaccacttataatacaaacacatgatg-ttttcaacttactcatactccaaaaccaag 19251089  T

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Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 140 - 334
Target Start/End: Original strand, 9443534 - 9443728
Alignment:
Q  140 ctatctaagtaagcactcccgagggttccaactccactcataatacaaacacgagccgatttttaacttactcatactctaataccaagctagaatcttg 239  Q
    ||||| |||||||||||||||||||||||||| |||||||||| |||| ||||   | ||||||| ||||||||||||| ||||||||||||| | ||||    
T  9443534 ctatcgaagtaagcactcccgagggttccaacaccactcataagacaagcacgtcgctatttttagcttactcatactccaataccaagctaggaccttg 9443633  T
Q  240 atattctcaatgaaaatatctatatccatcacaccattattgaaaataatctcattcctttgcttccaaatcactcaaatagaggcaagccaaat 334  Q
    |||||||| |  ||    || || || | |||||||||||| ||||| | ||||||| ||| ||||||||| || ||||||||  ||||||||||    
T  9443634 atattctccaccaattcctccatctcaaccacaccattattaaaaatcacctcattctttttcttccaaataacccaaatagaatcaagccaaat 9443728  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 744434 - 744492
Alignment:
Q  135 aaaaactatctaagtaagcactcccgagggttccaactccactcataatacaaacacga 193  Q
    |||| |||||||| |||| | || ||||||||||||| |||||| ||||||||||||||    
T  744434 aaaagctatctaattaagtattctcgagggttccaacaccactcgtaatacaaacacga 744492  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 748364 - 748422
Alignment:
Q  135 aaaaactatctaagtaagcactcccgagggttccaactccactcataatacaaacacga 193  Q
    |||| |||||||| |||| | || ||||||||||||| |||||| ||||||||||||||    
T  748364 aaaacctatctaattaagtattctcgagggttccaacaccactcgtaatacaaacacga 748422  T

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Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 140 - 373
Target Start/End: Complemental strand, 4282372 - 4282138
Alignment:
Q  140 ctatctaagtaagcactcccgagggttccaactccactcataatacaaacacgagccgatttttaa-cttactcatactctaataccaagctagaatctt 238  Q
    |||||| ||||| || |||||||||||||||| |||||||||||||||||| |   | |||||| | ||||||||||||| ||||||||||||||| |||    
T  4282372 ctatcttagtaaacaatcccgagggttccaacaccactcataatacaaacatgtcgctatttttcagcttactcatactccaataccaagctagaacctt 4282273  T
Q  239 gatattctcaatgaaaatatctatatccatcacaccattattgaaaataatctcattcctttgcttccaaatcactcaaatagaggcaagccaaatcaaa 338  Q
     |||||||| |  | |   || || || |  ||||||||||| || |||| |||||| |||  ||||||||| || |||||||| ||||||||||||||     
T  4282272 tatattctcgaccacatcctccatctctacaacaccattattaaagataacctcatttcttctcttccaaataacccaaatagaagcaagccaaatcaag 4282173  T
Q  339 caaaacccccttcttaatttcttagaagtagcctc 373  Q
    ||||| |||| ||||| |||| |||| | ||||||    
T  4282172 caaaatccccgtcttattttcctagatgaagcctc 4282138  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 25187880 - 25187958
Alignment:
Q  166 tccaactccactcataatacaaacacgagccgatttttaacttactcatactctaataccaagctagaatcttgatatt 244  Q
    |||||| ||||||||||||||| ||| |  | ||||||||||||||||||||| ||||||||||||  |||||||||||    
T  25187880 tccaacaccactcataatacaagcacaatgctatttttaacttactcatactccaataccaagctaacatcttgatatt 25187958  T

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Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 124 - 295
Target Start/End: Original strand, 19724198 - 19724369
Alignment:
Q  124 aaaaacaccggaaaaactatctaagtaagcactcccgagggttccaactccactcataatacaaacacgagccgatttttaacttactcatactctaata 223  Q
    |||||||||  || |||||||||||||| |||||| |||||||||||| | |||| ||||||||||| ||  | ||||||    ||||||||||| ||||    
T  19724198 aaaaacaccataacaactatctaagtaaacactcctgagggttccaacacaactcttaatacaaacatgataccattttttgtctactcatactccaata 19724297  T
Q  224 ccaagctagaatcttgatattctcaatgaaaatatctatatccatcacaccattattgaaaataatctcatt 295  Q
    ||||||||  | ||||||||||||||| ||    ||||  || | |||||||||||||||||||||||||||    
T  19724298 ccaagctaacaccttgatattctcaatcaattcttctacctcaagcacaccattattgaaaataatctcatt 19724369  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 140 - 310
Target Start/End: Original strand, 15063000 - 15063174
Alignment:
Q  140 ctatctaagtaagcactcccgagggttccaactccactcataatacaaacacgagccgatttttaacttactcatactctaataccaagcta----gaat 235  Q
    |||||||||||  | ||||||||||||||||| |||||| ||||||||||||||     |||||  | ||||||||||| ||||||||||||      |     
T  15063000 ctatctaagtagacgctcccgagggttccaacgccactcgtaatacaaacacgatatcgtttttcgcctactcatactccaataccaagctaacgtacac 15063099  T
Q  236 cttgatattctcaatgaaaatatctatatccatcacaccattattgaaaataatctcattcctttgcttccaaat 310  Q
    ||||||||||||||| ||    ||||  || | ||||||||||||||| |||||||||||| | |||||||||||    
T  15063100 cttgatattctcaatcaattcctctacctcaaccacaccattattgaagataatctcattcatatgcttccaaat 15063174  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 247
Target Start/End: Complemental strand, 28801065 - 28800958
Alignment:
Q  140 ctatctaagtaagcactcccgagggttccaactccactcataatacaaacacgagccgatttttaacttactcatactctaataccaagctagaatcttg 239  Q
    |||||||||||| || | |  ||||||||||| ||| ||||||||| |||| ||  | ||||| |  || ||||||||| ||||||||||||||| ||||    
T  28801065 ctatctaagtaaacaattctaagggttccaacaccaatcataatacgaacatgatgctattttaagtttgctcatactccaataccaagctagaaccttg 28800966  T
Q  240 atattctc 247  Q
    ||||||||    
T  28800965 atattctc 28800958  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 338
Target Start/End: Complemental strand, 17193098 - 17193029
Alignment:
Q  269 cacaccattattgaaaataatctcattcctttgcttccaaatcactcaaatagaggcaagccaaatcaaa 338  Q
    ||||||||| |||||||| |||||||| |||  ||||||||| || |||||||| |||||||||||||||    
T  17193098 cacaccatttttgaaaattatctcatttcttctcttccaaataacccaaatagaagcaagccaaatcaaa 17193029  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 247
Target Start/End: Complemental strand, 7859443 - 7859337
Alignment:
Q  140 ctatctaagtaagcactcccgagggttccaactccactcataatacaaacacgagccgatttttaacttactcatactctaataccaagctagaatcttg 239  Q
    |||||||||||| || |||| ||  ||| ||| ||||||||||||||||||||   | ||| | | ||||||||||||| |||||||||| |||| ||||    
T  7859443 ctatctaagtaa-caatcccaagaattcgaacaccactcataatacaaacacgtcgctattatcagcttactcatactccaataccaagcaagaaccttg 7859345  T
Q  240 atattctc 247  Q
    ||||||||    
T  7859344 atattctc 7859337  T

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