View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9987_low_2 (Length: 339)
Name: NF9987_low_2
Description: NF9987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9987_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 13346288 - 13346603
Alignment:
| Q |
1 |
tagagttggtttctctgctgctaccggagagttggttgaaatacatgatataattaattggtcttttgaatcatctttgtaaccaataactcttggagtt |
100 |
Q |
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| T |
13346288 |
tagagttggtttctctgctgctaccggagagttggttgaaatacatgatataattaattggtcttttgaatcatctttgtaaccgataactcttggagtt |
13346387 |
T |
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| Q |
101 |
tggggagtttaataattatactttcaatnnnnnnntgtttcttcgt----tgtgtattgtcaaaaaatatcgatgatttcatgattgtatgctttccttc |
196 |
Q |
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| T |
13346388 |
tggggagtttaataat--tactttcaataaaaaaatgtttcttcgttgcatgtgtatttttaaaaaatatcgatgatttcatgattgtaagcttttcttc |
13346485 |
T |
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| Q |
197 |
tgtttatatacctcatttgaacctatttgtaaaaaacagcataatttggtgacctcaaatataagcaaagtcactaaattcaacagtgtttactattatt |
296 |
Q |
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| T |
13346486 |
tgtttatatacctcatttgaacctatttgaaaaaaagagaataatttggtgacctcaaatataagcaaagtcactaaattcaacagtgtttactattatt |
13346585 |
T |
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| Q |
297 |
gttccaaaaatgaccatt |
314 |
Q |
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| T |
13346586 |
gttccaaaaatgaccatt |
13346603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 13337146 - 13337215
Alignment:
| Q |
1 |
tagagttggtttctctgctgctaccggagagttggttgaaatacatgatataattaattggtcttttgaa |
70 |
Q |
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| T |
13337146 |
tagagttggtttctctgctgctactggagaattggttgaaacacatgatatcattaattggtcttttgaa |
13337215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 13340487 - 13340556
Alignment:
| Q |
1 |
tagagttggtttctctgctgctaccggagagttggttgaaatacatgatataattaattggtcttttgaa |
70 |
Q |
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| T |
13340487 |
tagagttggtttctctgctgctactggagaattggttgaaacacatgatatcattaattggtcttttgaa |
13340556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 13354992 - 13355105
Alignment:
| Q |
8 |
ggtttctctgctgctaccggagagttggttgaaatacatgatataattaattggtcttttgaatcatctttg---taaccaataactcttggagtttggg |
104 |
Q |
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| T |
13354992 |
ggtttctctgcaactacaggagaactggttgaaacacatgatatcattaattggtcttttgaatcagccttgtaataaccagtaactcttgaagtttggg |
13355091 |
T |
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| Q |
105 |
gagtttaataatta |
118 |
Q |
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| T |
13355092 |
gagttaaattatta |
13355105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 280
Target Start/End: Original strand, 13340718 - 13340772
Alignment:
| Q |
227 |
aaaaaacagcataatttggtgacctcaaatataag-caaagtcactaaattcaac |
280 |
Q |
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|||||| || ||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
13340718 |
aaaaaagagtataatttggtgacctaaaatataagtaaaagtcactaaattcaac |
13340772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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