View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9987_low_3 (Length: 299)
Name: NF9987_low_3
Description: NF9987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9987_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 3228556 - 3228297
Alignment:
| Q |
1 |
gtgttgctaaaggtgctgcattgcaatgtgctattcttagcccaacgtttaaagtgcgagagtttcaggtaacatttcttcggcatttggttttgtgagt |
100 |
Q |
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| T |
3228556 |
gtgttgctaaaggtgctgcattgcaatgtgctattcttagcccaacgtttaaagtgcgagaatttcaggtaacatttcttcggcatttggttttgtgagt |
3228457 |
T |
|
| Q |
101 |
ttacttggttattgttttccattcctatttcttctactcataataaaagtgtgctcttttcggaataatgaatttttacattttcaaagctattttaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3228456 |
ttacttggttattgttttccattcctatttcttctactcataataaaagtgtgttcctttcggaataatgaatttttacattttcaaagctattttaatt |
3228357 |
T |
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| Q |
201 |
gcttatctttggtatatacctctgttaaggccttaatgaattttcacgcgggtttctttt |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3228356 |
gcttatctttggtatatacctctgttaaggccttaatgaattttcacgcgggtttctttt |
3228297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 43971284 - 43971344
Alignment:
| Q |
12 |
ggtgctgcattgcaatgtgctattcttagcccaacgtttaaagtgcgagagtttcaggtaa |
72 |
Q |
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| T |
43971284 |
ggtgctgcattgcagtgtgcaattcttagtccaacttttaaagtacgagagttccaggtaa |
43971344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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