View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9987_low_5 (Length: 272)
Name: NF9987_low_5
Description: NF9987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9987_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 6 - 264
Target Start/End: Original strand, 46274513 - 46274772
Alignment:
| Q |
6 |
acttttgatatattgatatgttagttctgttcacacatgttttacctaggatcccagaaaacagctacattagtagtactttagtttcattgattaatta |
105 |
Q |
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| T |
46274513 |
acttttgatatattgatatgttagttctgttcacacatgttttacctaggatcccagaaaacagctacattagtagtactttagtttcattgattaatta |
46274612 |
T |
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| Q |
106 |
accaatgtagctgccaagtttatttgagccaggggtgatttgtttcggttaatgacaatgtcaattgaattaattaagctacaaagaattaattgccc-n |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
46274613 |
accaatgtagctgccaagtttatttgagccaggggtgatttgtttcagttaatgacaatgtcaattgaattaattaagctgcaaagaattaattgccctt |
46274712 |
T |
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| Q |
205 |
nnnnnnnnaccatgtgtaatgaggacaggttcaagtataagacaattgaaaccctatgct |
264 |
Q |
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| T |
46274713 |
tttttttaaccatgtgtaatgaggataggttcaagtataagacaattgaaaccctttgct |
46274772 |
T |
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