View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9987_low_7 (Length: 255)
Name: NF9987_low_7
Description: NF9987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9987_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 49004632 - 49004405
Alignment:
| Q |
19 |
tccaagagctcagatacctacacgaaatccacaattaaacatttcaaagatttaacattcatctagagtatgatttcaagtttcaaacagcgtgtaagtg |
118 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||| |
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| T |
49004632 |
tccaaaagctcagatacctacaagaaatccacaattaaacatttcaaagatttaacattcatctagcttatgatttcaagcttcaaacagtgtgtaagtg |
49004533 |
T |
|
| Q |
119 |
taactttatatagctaccctctgggtaaaattctcaatcttctcaagaacaagagaaatattgagctccatttcttcagacccaacttggttagtctcaa |
218 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
49004532 |
taacattatatagctaccctctgagtaaaattctcaatcttctcaagaacaagagaaatattcagctccatttcttcagacccaacttggttagtctcaa |
49004433 |
T |
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| Q |
219 |
atccttcctcctgtacaagtacaatctg |
246 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
49004432 |
atccttcctcctgtacaagtacaatctg |
49004405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 38160655 - 38160426
Alignment:
| Q |
19 |
tccaagagctcagatacctacacgaaatccacaattaaacatttcaaagatttaacattcatctagagtatgatttcaagtttcaaacagcgtgtaagtg |
118 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||| ||| |
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| T |
38160655 |
tccaagagctcagatacctacaagaaatccacaattaaacatttcaaagatttaacattcatctacagtatgatttcaagcttcaaacagtgtgtaggtg |
38160556 |
T |
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| Q |
119 |
taactttatatagctaccctctgggtaaaattctcaatcttctcaagaacaagagaaatattgagctccatttcttcagacccaacttggttagtctcaa |
218 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||| |||||||||||||| |
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| T |
38160555 |
taactttatatagctaccctctgagtaaaattctcaatcttctcaagaacaagagaaacattgagttccatttcctcagacccaatttggttagtctcaa |
38160456 |
T |
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| Q |
219 |
atccttcctcctgtacaagtacaatctgtg |
248 |
Q |
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||||||||||||||||||| |||||||||| |
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| T |
38160455 |
atccttcctcctgtacaagcacaatctgtg |
38160426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 110 - 246
Target Start/End: Complemental strand, 38116760 - 38116624
Alignment:
| Q |
110 |
gtgtaagtgtaactttatatagctaccctctgggtaaaattctcaatcttctcaagaacaagagaaatattgagctccatttcttcagacccaacttggt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38116760 |
gtgtaagtgtaactttatatagctaccctctgggtaaaattctcaatcttctcaagaacaagagaaatattgagctccatttcttcagacccaacttggt |
38116661 |
T |
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| Q |
210 |
tagtctcaaatccttcctcctgtacaagtacaatctg |
246 |
Q |
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| T |
38116660 |
tagtctcaaatccttcctcctgtacaagtacaatctg |
38116624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 38116830 - 38116767
Alignment:
| Q |
19 |
tccaagagctcagatacctacacgaaatccacaattaaacatttcaaagatttaacattcatct |
82 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38116830 |
tccaagagctcagatacctacatgaaatccacaattaaacatttcaaagatttaacattcatct |
38116767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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