View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9988_high_2 (Length: 373)
Name: NF9988_high_2
Description: NF9988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9988_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 37 - 165
Target Start/End: Complemental strand, 33795440 - 33795312
Alignment:
| Q |
37 |
tgacccacaattcgatccccacatgccctatagtgtatattaaatattaagtcccttcacgggcagggacaaatatttatatagaaaagggtgtaaacat |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33795440 |
tgacccacaattcgatccccacatgccctatagtgtatattaaatattaagtcccttcacgggcagggacaaatatttatatagaaaagggtgtaaacat |
33795341 |
T |
|
| Q |
137 |
aacccgacaatggccaacaaagtgacatc |
165 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
33795340 |
aacccgacaatggccaacaaagtgacatc |
33795312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 223 - 363
Target Start/End: Complemental strand, 33795254 - 33795115
Alignment:
| Q |
223 |
ggggaacgagtattatcatggcaaattggacctctccatcacaatcttctccaaaattggaaaaggnnnnnnnnnncaaacaaatgaaagccaatcacaa |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33795254 |
ggggaacgagtattatcatggcaaattggacctctccatcacaatcttctccaaaattggaaaag-aaaaaaaaaacaaacaaatgaaagccaatcacaa |
33795156 |
T |
|
| Q |
323 |
aaacatctttaacaaccccatgatatcacataaagcctatg |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33795155 |
aaacatctttaacaaccccatgatatcacataaagcctatg |
33795115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University