View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9988_high_3 (Length: 362)
Name: NF9988_high_3
Description: NF9988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9988_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 11621663 - 11622012
Alignment:
| Q |
1 |
caaggaatcaaatcaaaagttgaagttatcttgcgtaggcgtccaatcatacctgatgtagcttcaagctcaagtcaaaggttttcatcaaggcttgata |
100 |
Q |
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| T |
11621663 |
caaggaatcaaatcaaaagttgaagttatcttgcgtaggcgtccaatcatacctgatgtagcttcaagctcaagtcaaaggttttcatcaaggcttgata |
11621762 |
T |
|
| Q |
101 |
gtcaaggtgatgttgaaattagttttgatagtaactaattgcatactagacatctttaatacacaaattagaactatatttatactttagtacagaagtc |
200 |
Q |
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| T |
11621763 |
gtcaaggtgatgttgaaattaattttgatagtaactaattgcatactagacatctttaatacacaaattagaactatattcatactttagtacagaagtc |
11621862 |
T |
|
| Q |
201 |
aaataagtatacgaacatgtatataaacaaccttaggatctacggcatgttgatttatcagagatattaagaatacctaatttaattgataatattctct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11621863 |
aaataagtatacgaacatgtatataaacaaccttaggatctacggcatgttgatttatcagagatattaagaatacctaatttaattgataatattctct |
11621962 |
T |
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| Q |
301 |
cggcagcaatcctaaaatactgagaattgctggtaatgaacacctatgct |
350 |
Q |
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| T |
11621963 |
cggcagcaatcctaaaatactgagaattgctggtaatgaacacctatgct |
11622012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 11640154 - 11640491
Alignment:
| Q |
1 |
caaggaatcaaatcaaaagttgaagttatcttgcgtaggcgtccaatcatacctgatgtagcttcaagctcaagtcaaaggttttcatcaaggcttgata |
100 |
Q |
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| T |
11640154 |
caaggaatcaaatccaaagttgaagttatctcgcacagacgtccaatcatacct---------tcaagctcaagtcaaaggctttcatcaagacttgata |
11640244 |
T |
|
| Q |
101 |
gtcaaggtgatgttgaaattagttttgatagtaactaattgcatactagacatctttaatacacaaattagaactatatttatactttagtacagaagtc |
200 |
Q |
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| T |
11640245 |
gtcaaggtaat-ttggaattaattttgttaataattaattatatacaatacatgctcaatgcacaaattaaaactataatcatactttagtgtggaagtc |
11640343 |
T |
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| Q |
201 |
aaataagtatacgaacatgtatataaacaaccttaggatctacggcatgttgatttatcagagata--ttaagaatacctaatttaattgataatattct |
298 |
Q |
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|||||| |||| ||||||| |||| ||||||||||||||||||||| ||||||||||||| ||||| |||| ||||||| |||| |||||||||| ||| |
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| T |
11640344 |
aaataaatatatgaacatgcatatcaacaaccttaggatctacggcgtgttgatttatcaaagatattttaaaaatacctgatttcattgataatagtct |
11640443 |
T |
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| Q |
299 |
ctcggcagcaatcctaaaatactgagaattgctggtaatgaacaccta |
346 |
Q |
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| T |
11640444 |
ctcaacagtactcctaaaattcagagagtcgctgataatgaacaccta |
11640491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 11605868 - 11605764
Alignment:
| Q |
40 |
cgtccaatcatacctgatgtagcttcaagctcaagtcaaaggttttcatcaaggcttgatagtcaaggtgatgttgaaattagttttgatagtaactaat |
139 |
Q |
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|||||||| ||| ||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||| |||||||| ||| |||| |
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| T |
11605868 |
cgtccaatgatatctggtgtaggttcaagctcaagtcaaaggcgttcatcaaggcttgatagtcaaggtaatgttggaatttattttgataataattaat |
11605769 |
T |
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| Q |
140 |
tgcat |
144 |
Q |
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||||| |
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| T |
11605768 |
tgcat |
11605764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 14484668 - 14484598
Alignment:
| Q |
74 |
gtcaaaggttttcatcaaggcttgatagtcaaggtgatgttgaaattagttttgatagtaactaattgcat |
144 |
Q |
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| T |
14484668 |
gtcaaaggcgttcatcaaggcttgatagtcaaagtaatgttggaatttattttgataataattaattgcat |
14484598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 33735417 - 33735487
Alignment:
| Q |
74 |
gtcaaaggttttcatcaaggcttgatagtcaaggtgatgttgaaattagttttgatagtaactaattgcat |
144 |
Q |
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| T |
33735417 |
gtcaaaggcgttcatcaaggcttgatagtcaaggtaatgttggaatttattttgataataattaattgcat |
33735487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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