View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9988_high_6 (Length: 328)
Name: NF9988_high_6
Description: NF9988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9988_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 114; Significance: 8e-58; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 4074573 - 4074714
Alignment:
| Q |
15 |
aaaggacaatggaaggaa-ggcttggatttgtttttcttcataacataaaatcctccttactttaatggaattcgaaaattgta-ttggagtgttttaag |
112 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| || |
|
|
| T |
4074573 |
aaaggacaatggaaggaaaggcttgggtttgtttttcttcataacataaaatcctccttactttagtggaattcgaaaattgtatttggagtgttttgag |
4074672 |
T |
|
| Q |
113 |
gggtttatatgaattcttcaaaattaacctatgtgacagtgg |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4074673 |
gggtttatatgaattcttcaaaattaacctatgtgacagtgg |
4074714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 34336079 - 34336123
Alignment:
| Q |
100 |
ggagtgttttaaggggtttatatgaattcttcaaaattaacctat |
144 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||| |||| |
|
|
| T |
34336079 |
ggagtgttttgaggggtttatatgaattcttcaaatttaatctat |
34336123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 29584236 - 29584269
Alignment:
| Q |
113 |
gggtttatatgaattcttcaaaattaacctatgt |
146 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
29584236 |
gggtttatatgaattcttcaaaattaatctatgt |
29584269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 33281812 - 33281709
Alignment:
| Q |
38 |
ggatttgtttttcttcataacataaaatcctccttactttaatggaattcgaaaattgtattgga---gtgttttaaggggtttatatgaattcttcaaa |
134 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||||||| | |||| |||| || |||||||||||||| | |||| ||||||||| |||||||||||||| |
|
|
| T |
33281812 |
ggatttattttttttcataatataaaatcctcctca-tttataggaactcaaaaattgtattggaagaggattttgaggggtttaaatgaattcttcaaa |
33281714 |
T |
|
| Q |
135 |
attaa |
139 |
Q |
| |
|
|||| |
|
|
| T |
33281713 |
tttaa |
33281709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 146
Target Start/End: Complemental strand, 6746598 - 6746565
Alignment:
| Q |
113 |
gggtttatatgaattcttcaaaattaacctatgt |
146 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
6746598 |
gggtttatatgaattcttcaaatttaacctatgt |
6746565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University