View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9988_low_1 (Length: 736)

Name: NF9988_low_1
Description: NF9988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9988_low_1
NF9988_low_1
[»] chr2 (3 HSPs)
chr2 (1-718)||(42666613-42667330)
chr2 (1-86)||(42667311-42667399)
chr2 (27-86)||(42667380-42667439)


Alignment Details
Target: chr2 (Bit Score: 698; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 698; E-Value: 0
Query Start/End: Original strand, 1 - 718
Target Start/End: Complemental strand, 42667330 - 42666613
Alignment:
Q  1 acattataaattctgaacctccaatgaagaagcagcatagacataaaagcgttgaaaattttcagagcattctgaattctgaacctgctactactgtgcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42667330 acattataaattctgaacctccaatgaagaagcagcatagacataaaagcgttgaaaattttcagagcattctgaattctgaacctgctactactgtgcc 42667231  T
Q  101 ttcttattcttctccttttcctgatttgttctattctaagaaaaacaaacagaagaaacttaactctgtttcgccgtcacaacatcatgtttcagctatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42667230 ttcttattcttctccttttcctgatttgttctattctaagaaaaacaaacagaagaaacttaactctgtttcgccgtcacaaaatcatgtttcagctatg 42667131  T
Q  201 attatgtcaaaaacaaaggatgaggatttttctgtgattactggtaatgagtcgccattgaactcaatacctccaccgcctcctcctccacctccgttca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42667130 attatgtcaaaaacaaaggatgaggatttttctgtgattactggtaatgagtcgccattgaactcaatacctccaccgcctcctcctccacctccgttca 42667031  T
Q  301 agatgccagcatggaagttcaaggtgcagggtgactttgttagaatagatagcattagtagttcaagttcggtagatatagatgaggaagtagtggagtt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42667030 agatgccagcatggaagttcaaggtgcagggtgactttgttagaatagatagcattagtagttcaagttcggtagatatagatgaggaagtagtggagtt 42666931  T
Q  401 accaaccattagtggtgaagaaactggaattgatctattggtgtatccaaatcccaaccccggtgttgataacaaagctggtagtttcattgaaagtttc 500  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42666930 accaaccattagtggcgaagaacctggaattgatctattggtgtatccaaatcccaaccccggtgttgataacaaagctggtagtttcattgaaagtttc 42666831  T
Q  501 agagctggtttaaggatggagaaaatgaattctatgaagaagcaggggatggggaggtctaatctctatgatacccttcatcaccagaaccattaacaaa 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42666830 agagctggtttaaggatggagaaaatgaattctatgaagaagcaggggatggggaggtctaatctctatgatacccttcatcaccagaaccattaacaaa 42666731  T
Q  601 agaagaagctgaaagcattgtcttaagtcatttttaattgatttgtttctgaagtgaattgttttgttctgatgtatacattgaattcaagttcatacga 700  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42666730 agaagaagctgaaagcattgtcttaagtcattttcaattgatttgtttcagaagtgaattgttttgttctgatgtatacattgaattcaagttcatacga 42666631  T
Q  701 gtcatagtactgctcttt 718  Q
    ||||||||||||||||||    
T  42666630 gtcatagtactgctcttt 42666613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 42667399 - 42667311
Alignment:
Q  1 acattataaattctgaacctccaatgaagaagcagcatagac---ataaaagcgttgaaaattttcagagcattctgaattctgaacct 86  Q
    |||||||||||||||||||||||||||||||| |||||||||   |||||||||||||||||||||||| |||| | ||||||||||||    
T  42667399 acattataaattctgaacctccaatgaagaagaagcatagacataataaaagcgttgaaaattttcagaacattataaattctgaacct 42667311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 42667439 - 42667380
Alignment:
Q  27 aagaagcagcatagacataaaagcgttgaaaattttcagagcattctgaattctgaacct 86  Q
    |||||| ||||||||||||||||||||||||||||||||| |||| | ||||||||||||    
T  42667439 aagaagaagcatagacataaaagcgttgaaaattttcagaacattataaattctgaacct 42667380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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