View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9988_low_11 (Length: 285)
Name: NF9988_low_11
Description: NF9988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9988_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 4656219 - 4655960
Alignment:
| Q |
19 |
aatgacaccccctcgtaggaacaatcattacttgagcaatcggaggtatcggtacaattattagctgaaatgtaaaaata--agaataaaagaatgttat |
116 |
Q |
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| T |
4656219 |
aatgacaccccctcgtaggaacaatgattacttgagcaatcggatatatcggtacaattatgagctgaaatgtaagaatacaagaataaaagaatgttat |
4656120 |
T |
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| Q |
117 |
tgaaaatggtcaaaagattatgtatgaggtcaatttgaaaacttgaatgcaacgagaaaaaggcttaccattggcattggtaacaacaagaaatagagaa |
216 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4656119 |
tgaaaatggtcaaaatattatgtatgaggtcaatttgaaaacttgaatgcaatgagaaaaaggcttaccattggcattggtaacaacaagaaatagagaa |
4656020 |
T |
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| Q |
217 |
attaaaatgaacatagtataaacaaacttaaaaaacttagtcatatttggtttcctatgc |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4656019 |
attaaaatgaacatagtataaacaaacttaaaaaacttagtcatatttggtttcctatgc |
4655960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 4647773 - 4647515
Alignment:
| Q |
19 |
aatgacaccccctcgtaggaacaatcattacttgagcaatcggaggtatcggtacaattattagctgaaatgtaaaaataagaataaaagaatgttattg |
118 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4647773 |
aatgacaccccctcataggaacaatgattacttgagcaatcggaggtatcggtacaattattagctgaaatgtaaaaataagaataaaagaatgttattg |
4647674 |
T |
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| Q |
119 |
aaaatggtcaaaagattatgtatgaggtcaatttgaaaacttgaatgcaacgag-aaaaaggcttaccattggcattggtaacaacaagaaatagagaaa |
217 |
Q |
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| T |
4647673 |
aaaatggtcagaagattatgtatgaggtcaatttgaaaacttgaatacggtgagaaaaaagtcttaccattggcattggtaacaacaagaaatagagaaa |
4647574 |
T |
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| Q |
218 |
ttaaaatgaacatagtataaacaaacttaaaaaacttagtcatatttggtttcctatgc |
276 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4647573 |
ttaaaatgaacatagtataaacaaacttaaaaaacttggtcatatttggtttcctatgc |
4647515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 31038244 - 31038188
Alignment:
| Q |
207 |
aaatagagaaattaaaatgaacatagtataaacaaacttaaaaaacttagtcatatt |
263 |
Q |
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| T |
31038244 |
aaatagagaaatcaaaatgatcataccataaacaaacttaagaaacttaatcatatt |
31038188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 245
Target Start/End: Complemental strand, 23233497 - 23233451
Alignment:
| Q |
199 |
acaacaagaaatagagaaattaaaatgaacatagtataaacaaactt |
245 |
Q |
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|||||||||||||| |||| |||||||| ||||||||||| |||||| |
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| T |
23233497 |
acaacaagaaatagggaaactaaaatgatcatagtataaaaaaactt |
23233451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 22815879 - 22815825
Alignment:
| Q |
191 |
cattggtaacaacaagaaatagagaaattaaaatgaacatagtataaacaaactt |
245 |
Q |
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||||| |||||||||||||||||||||| |||| || ||| ||||||||||||| |
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| T |
22815879 |
cattgataacaacaagaaatagagaaataaaaaggagtataatataaacaaactt |
22815825 |
T |
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