View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9988_low_12 (Length: 276)
Name: NF9988_low_12
Description: NF9988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9988_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 34519684 - 34519882
Alignment:
| Q |
17 |
agttataaccaaaacatcgacttacttgtccagaaagctgaacaggcctaactaattaacttacataagatctactagaactaaacctcggttaatcagt |
116 |
Q |
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| T |
34519684 |
agttataaccaaaacaccgacttacttgtccagaaagctgaacaggcctaactaattaacttacataagatctactagaactaaacctcggttaatcagt |
34519783 |
T |
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| Q |
117 |
ttggaggttcattaatttcagagac-----taaattgtatgttctcaacaacttttagggattaaaaccaatgattcgttaatttcagagactagctaa |
210 |
Q |
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| T |
34519784 |
ttggaggttcattaatttcagagactaaattaaattgtatgttctcaacaacttttagggattaaaaccaatgattcgttaatttcagagactagctaa |
34519882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 34531177 - 34531363
Alignment:
| Q |
18 |
gttataaccaaaacatcgacttacttgtccagaaagctgaacaggcctaactaattaactta-cataagatctactagaactaaac-------------- |
102 |
Q |
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| T |
34531177 |
gttataactgaaacaccgactaacttgtccaaaaagctaaacaggtctaactaattaacttaacagaagatctactagaactaaactaacacaaattgaa |
34531276 |
T |
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| Q |
103 |
----ctcggttaatcagtttggaggttcattaatttcagagactaaattgtatgttctcaacaacttttagggattaaaaccaatgatt |
187 |
Q |
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| T |
34531277 |
aaccctcggttaatcagtttggaggttcgttaaatccaaagaacaaattgtat--tctcaacaacttttagggattaaaaccagtgatt |
34531363 |
T |
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