View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9988_low_13 (Length: 256)
Name: NF9988_low_13
Description: NF9988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9988_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 6448671 - 6448870
Alignment:
| Q |
19 |
ttaaaaggagtaaaatcaacccaaaaggagtaaaaatgtgaggaatattcatttcacccataattgcgtctaagtaaactcagttaacagagtcatatgc |
118 |
Q |
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| T |
6448671 |
ttaaaaggagtaaaatcaacccaaaacgggtaaaaatttgaggaatattcatttcatccataattgcgtctaagtaaactcagttaacagagtcatatgt |
6448770 |
T |
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| Q |
119 |
tttct--aaaccaacttcaaccaataacaattcctttttaagcttgcgagcctcaccaactatttcattagcaacaagaatttcatcaaggatatgtctg |
216 |
Q |
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| T |
6448771 |
tttctcaaaaccgacttcaaacaataacaattcctttttaagcttgcgagcctcaccaactatttcattagcaacaagaatttcatcaaggatatgtctg |
6448870 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 17057090 - 17057143
Alignment:
| Q |
163 |
cgagcctcaccaactatttcattagcaacaagaatttcatcaaggatatgtctg |
216 |
Q |
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| T |
17057090 |
cgagcctcatcgactatttcattagcaataagaatgccatcaaggatctgtctg |
17057143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 22190361 - 22190308
Alignment:
| Q |
163 |
cgagcctcaccaactatttcattagcaacaagaatttcatcaaggatatgtctg |
216 |
Q |
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| T |
22190361 |
cgagcctcatcgactatttcattagcaataagaatgccatcaaggatctgtctg |
22190308 |
T |
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