View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9988_low_14 (Length: 254)
Name: NF9988_low_14
Description: NF9988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9988_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 16353575 - 16353339
Alignment:
| Q |
1 |
aacacaagaaatattcaaaagcaaatgtctcaacttttctccctttcgatcaatagattcatcaaacaacctaacatgccttctttctctcttgtattac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16353575 |
aacacaagaaatattcaaaagcaaatgtctcaacttttctccctttcgatcaatagattcatcaaacaacctaacatgccttctttctctcttgtattac |
16353476 |
T |
|
| Q |
101 |
cttagtccacaagattgtgcaaacttcaaagaaattctttcaaatcggattcattacttctattgaatgacttctctctgatagtatccaatagaggtct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16353475 |
cttagtccacaagattgtgcaaacttcaaagaaattctttcaaatcggattcattacttctattgaatgacttctctctgatagtatccaatagaggtct |
16353376 |
T |
|
| Q |
201 |
ccataaccgccctctacacgtgcttcgtcctccatac |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16353375 |
ccataaccgccctctacacgtgcttcgtcctccatac |
16353339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University