View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9988_low_16 (Length: 208)

Name: NF9988_low_16
Description: NF9988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9988_low_16
NF9988_low_16
[»] chr5 (8 HSPs)
chr5 (17-191)||(33763627-33763801)
chr5 (17-130)||(33867285-33867399)
chr5 (17-112)||(33904848-33904943)
chr5 (17-97)||(33698933-33699013)
chr5 (17-112)||(33736436-33736531)
chr5 (17-97)||(33823157-33823237)
chr5 (24-133)||(33750156-33750264)
chr5 (17-111)||(33680385-33680479)
[»] scaffold0001 (1 HSPs)
scaffold0001 (17-111)||(149251-149345)
[»] chr7 (1 HSPs)
chr7 (17-110)||(5468536-5468629)
[»] scaffold0023 (1 HSPs)
scaffold0023 (17-134)||(88896-89013)
[»] chr8 (1 HSPs)
chr8 (34-104)||(21306322-21306392)
[»] scaffold0193 (1 HSPs)
scaffold0193 (17-133)||(23305-23420)
[»] scaffold0247 (1 HSPs)
scaffold0247 (17-133)||(19857-19972)


Alignment Details
Target: chr5 (Bit Score: 159; Significance: 7e-85; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 33763801 - 33763627
Alignment:
Q  17 aggtgcctggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcatttagttccacagagagcaggtattaac 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33763801 aggtgcctggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcattttgttccacagagagcaggtattaac 33763702  T
Q  117 gaatgttgcttattctatatattgtgtatgtggcttataattagttaagctgaacaactatataaggtctgaact 191  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  33763701 gaatgttgcttattctatatattgtgtatttggcttataatcagttaagcggaacaactatataaggtctgaact 33763627  T

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Target: chr5; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 33867399 - 33867285
Alignment:
Q  17 aggtgcctggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcatttagttccacagagagcaggtat-taa 115  Q
    |||||| ||||||||||||||||| ||||||||||||||||| ||  | ||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  33867399 aggtgcatggacatatgaggaagacaagctactcaaggcttgtatgcagaagtatggtgaaggaaaatggcatttagttccacaaagagcaggtatataa 33867300  T
Q  116 cgaatgttgcttatt 130  Q
     ||| ||||||||||    
T  33867299 tgaaagttgcttatt 33867285  T

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Target: chr5; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 33904943 - 33904848
Alignment:
Q  17 aggtgcctggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcatttagttccacagagagcaggtat 112  Q
    |||||| ||||||||||||||||| ||||||||||||||||| ||  | ||||||||||||||||||||||||||||||||||| |||||||||||    
T  33904943 aggtgcatggacatatgaggaagacaagctactcaaggcttgtatacagaagtatggtgaaggaaaatggcatttagttccacaaagagcaggtat 33904848  T

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Target: chr5; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 33699013 - 33698933
Alignment:
Q  17 aggtgcctggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcatttagttcc 97  Q
    |||||| |||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  33699013 aggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatggtgaaggaaaatggcatttagttcc 33698933  T

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Target: chr5; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 33736531 - 33736436
Alignment:
Q  17 aggtgcctggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcatttagttccacagagagcaggtat 112  Q
    |||||| ||||||||||||||||| ||||||||||||||||| ||  | |||||||||||||||||||||||||||||| | || |||||||||||    
T  33736531 aggtgcatggacatatgaggaagacaagctactcaaggcttgtatacagaagtatggtgaaggaaaatggcatttagtttctcaaagagcaggtat 33736436  T

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Target: chr5; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 33823237 - 33823157
Alignment:
Q  17 aggtgcctggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcatttagttcc 97  Q
    |||||| ||||||||||||||||| ||  |||||||||||| |||| ||||||||||||||||||||||||||||| ||||    
T  33823237 aggtgcatggacatatgaggaagacaacttactcaaggcttacattcacaagtatggtgaaggaaaatggcatttaattcc 33823157  T

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Target: chr5; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 24 - 133
Target Start/End: Complemental strand, 33750264 - 33750156
Alignment:
Q  24 tggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcatttagttccacagagagcaggtattaacgaatgtt 123  Q
    ||||||| ||||||||| ||| ||||||| ||||  ||||||||||||||||||||||||||||||||| ||||  | |||||||||| ||  |||||||    
T  33750264 tggacatctgaggaagacaagttactcaaagcttatattaacaagtatggtgaaggaaaatggcatttaattcctaaaagagcaggta-tagtgaatgtt 33750166  T
Q  124 gcttattcta 133  Q
    |||| |||||    
T  33750165 gctttttcta 33750156  T

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Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 33680479 - 33680385
Alignment:
Q  17 aggtgcctggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcatttagttccacagagagcaggta 111  Q
    |||||| |||||||||||||| || || ||||||||||  || ||| | || ||||||||||| |||||||||||||||||  | ||||||||||    
T  33680479 aggtgcatggacatatgaggaggacaatctactcaaggactgtattcaaaaatatggtgaagggaaatggcatttagttcctaaaagagcaggta 33680385  T

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Target: scaffold0001 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 149345 - 149251
Alignment:
Q  17 aggtgcctggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcatttagttccacagagagcaggta 111  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| || ||||||||||    
T  149345 aggtgcctggacatacgaggaagataagctactcaaggcttgcattgacaagtatggggaaggaaaatggcatttagttcctcaaagagcaggta 149251  T

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Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 5468536 - 5468629
Alignment:
Q  17 aggtgcctggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcatttagttccacagagagcaggt 110  Q
    |||||| |||||||| |||||||| ||  |||||||||||| |||||||||||||||||||||||||||||||||| |||| || |||||||||    
T  5468536 aggtgcatggacatacgaggaagacaacttactcaaggcttacattaacaagtatggtgaaggaaaatggcatttaattcctcaaagagcaggt 5468629  T

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Target: scaffold0023 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 88896 - 89013
Alignment:
Q  17 aggtgcctggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcatttagttccacagagagcaggtattaac 116  Q
    |||| |||||||  |||| ||||||||  |||||||||| |||||||||||||||||| |||||||||||||| ||||||| |  |||||||||||  ||    
T  88896 aggtacctggacgaatgaagaagataacttactcaaggcatgcattaacaagtatggtcaaggaaaatggcatctagttcctcgaagagcaggtatatac 88995  T
Q  117 gaatgttgcttattctat 134  Q
    ||||  ||||||||||||    
T  88996 gaatcatgcttattctat 89013  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 21306392 - 21306322
Alignment:
Q  34 aggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcatttagttccacagaga 104  Q
    |||||||| |||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| ||||||    
T  21306392 aggaagatgagctactcaaggcttgcattaacacgtacggtgaaggaaaatggaatttagttcctcagaga 21306322  T

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Target: scaffold0193 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 23305 - 23420
Alignment:
Q  17 aggtgcctggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcatttagttccacagagagcaggtattaac 116  Q
    |||||| ||||||||||| ||||| ||    |||||||||| ||||  |||| |||||| |||||||||||||||| ||||  | ||| |||||| ||||    
T  23305 aggtgcatggacatatgaagaagacaactgtctcaaggcttacattctcaagcatggtgtaggaaaatggcatttaattcctgaaagaacaggta-taac 23403  T
Q  117 gaatgttgcttattcta 133  Q
    ||||||| |||||||||    
T  23404 gaatgttccttattcta 23420  T

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Target: scaffold0247 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 19857 - 19972
Alignment:
Q  17 aggtgcctggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcatttagttccacagagagcaggtattaac 116  Q
    |||||| ||||||||||| ||||| ||    |||||||||| ||||  |||| |||||| |||||||||||||||| ||||  | ||| |||||| |||     
T  19857 aggtgcatggacatatgaagaagacaactgtctcaaggcttacattctcaagcatggtgtaggaaaatggcatttaattcctgaaagaacaggta-taaa 19955  T
Q  117 gaatgttgcttattcta 133  Q
    ||||||| |||||||||    
T  19956 gaatgttccttattcta 19972  T

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