View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9988_low_2 (Length: 566)
Name: NF9988_low_2
Description: NF9988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9988_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 17 - 553
Target Start/End: Original strand, 31099347 - 31099883
Alignment:
| Q |
17 |
atcaacatgtgtctgtaaagctctaaagtcacttaattggtattgtgcaatgccatgagcataaaatttgataccttagtccactaaagaacatgggata |
116 |
Q |
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| T |
31099347 |
atcaacatgtgtctgtaaagctctaaagtcacttaattggtattgtgcaatgccatgagcataaaatttgataccttagtccactaaagaacatgggata |
31099446 |
T |
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| Q |
117 |
tggttccctaacctcacaatactaatctcataggttgcaaatgggtttatgagtcaaaagaaagtctaatggtgatatttaaaaatacaaaaatcgatct |
216 |
Q |
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| T |
31099447 |
tggttccctaacctcacaatactaatctcataggttgcaaatgggtttatgagtcaaaagaaagtctaatggtgatatttaaaaatacaaagatcgatct |
31099546 |
T |
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| Q |
217 |
gtagccaagggttttcatcaatgacccgagcttgattataatcatacattaattcttgttgtaaagccaacaacaataagactggttctctccttaacac |
316 |
Q |
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| T |
31099547 |
gtagccaagggttttcatcaatgacccgagcttgattataatcatacattaattcttgttgtaaagccaacaacaataagactggttctctccttaacac |
31099646 |
T |
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| Q |
317 |
tacaaaataattgccacttcgtcaacttgaagtgaataatgactttttgaatgttctctaagcaaagaagtctatatgcaacaaccttgaggtttcattc |
416 |
Q |
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| T |
31099647 |
tacaaaacaattgccacttcgtcaacttgaagtgaataatgactttttgaatgttctctaagcaaagaagtctatatgcaacaaccttgaggtttcattc |
31099746 |
T |
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| Q |
417 |
atccaaacagatgacaacatttgtcacctacgaaagtttatttacggcctaaacccaacacaccacttgcctggttcaaaaccttgtgtaaatttctcta |
516 |
Q |
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| T |
31099747 |
atccaaacagatgacaacatttgtcacctacgaaagtttatttacggcctaaacccaacacaccacttgcctggttcaaaaccttgtgtaaatttctcta |
31099846 |
T |
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| Q |
517 |
tgactatgggtttgtgaacttcaaatccgactcttct |
553 |
Q |
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| T |
31099847 |
tgactatgggtttgtgaacttcaaatccgactcttct |
31099883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 357
Target Start/End: Original strand, 1703142 - 1703227
Alignment:
| Q |
273 |
tgttgtaaagccaacaacaataagactggttctctccttaacactacaaaataatt-gccacttcgtcaacttgaagtgaataatg |
357 |
Q |
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| T |
1703142 |
tgttgtcaagccaacaacgataagactagttctttctttagcactgcaacataattggccactccgtcaactagatgtcaataatg |
1703227 |
T |
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