View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9988_low_5 (Length: 349)

Name: NF9988_low_5
Description: NF9988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9988_low_5
NF9988_low_5
[»] chr1 (8 HSPs)
chr1 (1-341)||(42203658-42203998)
chr1 (1-341)||(42212526-42212866)
chr1 (156-341)||(42420537-42420721)
chr1 (1-114)||(42218703-42218817)
chr1 (1-114)||(42420262-42420375)
chr1 (164-247)||(42218452-42218535)
chr1 (156-306)||(42408714-42408867)
chr1 (118-156)||(42218599-42218637)


Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 42203998 - 42203658
Alignment:
Q  1 ggagcaactatcccggcttttacagctctagctttgtctccatgataaatacatagattaaatatagcagtagcagcaccttttttgccacttggagtac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42203998 ggagcaactatcccggcttttacagctctagctttgtctccatgataaatacatagattaaatatagcagtagcagcaccttttttgcctcttggagtac 42203899  T
Q  101 cttcacaaagtaacataactaaagagagttatagctgcattttctctagcctccatcctttgttactctcgttgatggaatgattgagaagtactgtaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42203898 cttcacaaagtaacataactaaagagagttatagctgcattttctctagcctccatcctttgttactctcgttgatggaatgattgagaagtactgtaac 42203799  T
Q  201 aacgtgctcctgagttcaatgatctgtggaagacaacaagtctacgagaagcggtattgctcctgccttgacaatacatactcgatctgcattcctctta 300  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42203798 aacgtgctcctgagttcgatgatctgtggaagacaacaagtctacgagaagcggtattgctcctgccttgacaatacatactcgatctgcattcctctta 42203699  T
Q  301 gccagctagcaaccggagctcatcatcagccaccctttgct 341  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42203698 gccagctagcaaccggagctcatcatcagccaccctttgct 42203658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 42212866 - 42212526
Alignment:
Q  1 ggagcaactatcccggcttttacagctctagctttgtctccatgataaatacatagattaaatatagcagtagcagcaccttttttgccacttggagtac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42212866 ggagcaactatcccggcttttacagctctagctttgtctccatgataaatacatagattaaatatagcagtagcagcaccttttttgcctcttggagtac 42212767  T
Q  101 cttcacaaagtaacataactaaagagagttatagctgcattttctctagcctccatcctttgttactctcgttgatggaatgattgagaagtactgtaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42212766 cttcacaaagtaacataactaaagagagttatagctgcattttctctagcctccatcctttgttactctcgttgatggaatgattgagaagtactgtaac 42212667  T
Q  201 aacgtgctcctgagttcaatgatctgtggaagacaacaagtctacgagaagcggtattgctcctgccttgacaatacatactcgatctgcattcctctta 300  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42212666 aacgtgctcctgagttcgatgatctgtggaagacaacaagtctacgagaagcggtattgctcctgccttgacaatacatactcgatctgcattcctctta 42212567  T
Q  301 gccagctagcaaccggagctcatcatcagccaccctttgct 341  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42212566 gccagctagcaaccggagctcatcatcagccaccctttgct 42212526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 156 - 341
Target Start/End: Original strand, 42420537 - 42420721
Alignment:
Q  156 tcctttgttactctcgttgatggaatgattgagaagtactgtaacaacgtgctcctgagttcaatgatctgtggaagacaacaagtctacgagaagcggt 255  Q
    ||||||||||||||||||||||||| |||| |||||| |||||||| | ||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  42420537 tcctttgttactctcgttgatggaaagattcagaagtgctgtaacagcatgctcctgagttcgaggatctgtggaagacaacaagtctacgagaagcggt 42420636  T
Q  256 attgctcctgccttgacaatacatactcg---atctgcattcctcttagccagctagcaaccggagctcatcatcagccaccctttgct 341  Q
    ||||||||||| | | | |||||||||||   ||||||||||||||| |||    ||||||||||||||| || ||||| |||||||||    
T  42420637 attgctcctgcttcggctatacatactcggttatctgcattcctcttggcc----agcaaccggagctcaccagcagccgccctttgct 42420721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 42218817 - 42218703
Alignment:
Q  1 ggagcaactatcccggcttttacagctctagctttgtctccatgataaatacatagattaaatatagcagtagcagcacctt-ttttgccacttggagta 99  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||    
T  42218817 ggagcaactatcccggctttcacagctctagctttgtttccatgataaatacatagattaaatatagcggtagcagcacctttttttgcctcttggagta 42218718  T
Q  100 ccttcacaaagtaac 114  Q
    |||||||||||||||    
T  42218717 ccttcacaaagtaac 42218703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 42420262 - 42420375
Alignment:
Q  1 ggagcaactatcccggcttttacagctctagctttgtctccatgataaatacatagattaaatatagcagtagcagcaccttttttgccacttggagtac 100  Q
    |||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||    
T  42420262 ggagcaactatcccggctttaacagctctagctttgtttccttgataaatacatagattaaatatagcagtagctgcatcttttttgcctcttggagtac 42420361  T
Q  101 cttcacaaagtaac 114  Q
    ||||||||||||||    
T  42420362 cttcacaaagtaac 42420375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 164 - 247
Target Start/End: Complemental strand, 42218535 - 42218452
Alignment:
Q  164 tactctcgttgatggaatgattgagaagtactgtaacaacgtgctcctgagttcaatgatctgtggaagacaacaagtctacga 247  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||| |||||||||||||||||||    
T  42218535 tactctcgttgatggaatgattgagaagtactgtaacaacatgctcctgagttcgaggatctgttgaagacaacaagtctacga 42218452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 156 - 306
Target Start/End: Original strand, 42408714 - 42408867
Alignment:
Q  156 tcctttgttactctcgttgatggaatgattgagaagtactgtaacaacgtgctcctgagttcaatgatctgtggaagacaacaagtctacgagaagcggt 255  Q
    ||||||||||||||| ||||||| | | ||||||||| |||||||| | || ||| |||||||| |||| ||||| |||||||  ||||| |||||||||    
T  42408714 tcctttgttactctctttgatggtaaggttgagaagtgctgtaacagcatgttcccgagttcaaggatccgtggaggacaacagctctacaagaagcggt 42408813  T
Q  256 attgctcctgccttgacaatacatactcg---atctgcattcctcttagccagc 306  Q
    ||||||||||  | | ||||||||||| |   ||||||||||||||| ||||||    
T  42408814 attgctcctgattcggcaatacatacttggttatctgcattcctcttggccagc 42408867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 42218637 - 42218599
Alignment:
Q  118 actaaagagagttatagctgcattttctctagcctccat 156  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  42218637 actaaagagagtcgtagctgcattttctctagcctccat 42218599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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