View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9988_low_6 (Length: 340)
Name: NF9988_low_6
Description: NF9988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9988_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 20 - 335
Target Start/End: Complemental strand, 14085383 - 14085065
Alignment:
| Q |
20 |
catacgccacattttgtaacttctgttttgcttcttttgcgtcaaatagttctagccatcgaactaacaacatgcttaaacatatgaatgtttgtccaaa |
119 |
Q |
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| T |
14085383 |
catacgccgaattttgtaacttctgttttgcttcttttgcgtcaaatagttctagccatcaaactaacaacatgcttaaacatatgaatgtttgtccaaa |
14085284 |
T |
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| Q |
120 |
aacatgaaggtaattcttttactcttttaggttaatattggtttagca---ttgttttaactttgtatttgatttagtctatgtttactctgttttgata |
216 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14085283 |
aacatgaaggtgattcttttactcttttagggtaatattggtttagcatttttgttttaactttgtatttgatttagtctatgtttactctgttttgata |
14085184 |
T |
|
| Q |
217 |
gttgtctttgattttagtttgctatactgtcatattttatggctttgatttgttagttactaatgtatattttctttannnnnnnnnaacaggttaacaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14085183 |
gttgtctttgattttagtttgctatactgtcatattttatggctttgatttgttagttactaatgtatattttctttatttttttttaacaggttaacaa |
14085084 |
T |
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| Q |
317 |
atattctttctgtgctgct |
335 |
Q |
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|||||||||||||| |||| |
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| T |
14085083 |
atattctttctgtgatgct |
14085065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 50 - 289
Target Start/End: Original strand, 12190016 - 12190254
Alignment:
| Q |
50 |
cttcttttgcgtcaaatagttctagccatcgaactaacaacatgcttaaacatatgaatgtttgtccaaaaacatgaaggtaattcttttactcttttag |
149 |
Q |
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||||||||| |||||| ||| | ||||||||||||||||||||||||||| |||| |||||||||||||||||||||| || ||||| | | | |
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| T |
12190016 |
cttcttttgtttcaaatgcttccaaccatcgaactaacaacatgcttaaacacatgatgatttgtccaaaaacatgaaggtagtttttttattactctga |
12190115 |
T |
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| Q |
150 |
gttaatattggtttagca---ttgttttaactttgtatttgatttagtctatgtttactctgttttgatagttgtctttgattttagtttgctatactgt |
246 |
Q |
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|||| | ||| ||||| | || || ||||||||||||||||||||||||| || ||||| ||||| ||| |||||||||| ||||||||| || ||| |
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| T |
12190116 |
gtta-tgttgatttagtaattttattgtaactttgtatttgatttagtctattttaactctattttggtagatgtctttgatgttagtttgc--tagtgt |
12190212 |
T |
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| Q |
247 |
catattttatggctttgatttgttagttactaatgtatatttt |
289 |
Q |
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||||||| |||||||||||| |||| |||||||||||||||| |
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| T |
12190213 |
tatattttgtggctttgatttattag-tactaatgtatatttt |
12190254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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