View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9988_low_7 (Length: 333)
Name: NF9988_low_7
Description: NF9988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9988_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 7062378 - 7062677
Alignment:
| Q |
18 |
attcttaattgtatgcatcgaccatgtgagataggcttcttagctaggtattggggatttattaatcaattagcaaccgtgtgtgagatgagattaaatt |
117 |
Q |
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| T |
7062378 |
attcttaattgtatgcatctaccatgtga--taggcttcttagctaggtatgggggatttatta-tcaattagcaaccgtgtgtgagatgagattaaatt |
7062474 |
T |
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| Q |
118 |
cttgcaatcgacctaattatgtactcagtctcccaaaaagagaaggccacaactgactgtttctttgaacaccaataatttggtgcagctagaatcccta |
217 |
Q |
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| T |
7062475 |
cttgcaatcgacctaattatgtactcagtctcccaaaaagagaaggccacaactgactgtttctttgaacaccaataatttggtgcag---------cta |
7062565 |
T |
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| Q |
218 |
acaaggatcataagtcaacctatcaaccttatgtccaaagcagtctgcaccagaaaattcctgcaggcttacaaccataaatttagattcattttaagta |
317 |
Q |
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| T |
7062566 |
acaaggatcataagtcatcctatcaaccttatgtccaaagcagtctgcaccagaaaattccagcaagcttacaaccataaatttagattcattttaagta |
7062665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 38 - 289
Target Start/End: Original strand, 7010392 - 7010640
Alignment:
| Q |
38 |
accatgtgagataggcttcttagctaggtattggggatttattaatcaattagcaaccgtgtgtgagatgagattaaattcttgcaatcgacctaattat |
137 |
Q |
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| T |
7010392 |
accatgtgagataggcttcttagctaggtattagggatttatta-tcaattagcaaccgtgtgtgagattagatt-----cttgcattcaacccaattat |
7010485 |
T |
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| Q |
138 |
gtactcagtctcccaaaaagagaaggccacaa-ctgactgtttctttgaacaccaataatttggtgcagctagaatccctaacaaggat--cataagtca |
234 |
Q |
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| T |
7010486 |
gtactcagtctcccaaaaatagaaggccacaagctgactgttcctttgaacaccaataatttggtgcagctagaatccctaacaaggattatataagtcc |
7010585 |
T |
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| Q |
235 |
acctatcaaccttatgtccaaagcagtctgcaccagaaaattcctgcaggcttac |
289 |
Q |
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| T |
7010586 |
tcctatcagccttatgtccaaagcagtctgcaccagaaaatcccagcaggattac |
7010640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 38 - 289
Target Start/End: Original strand, 7025750 - 7025998
Alignment:
| Q |
38 |
accatgtgagataggcttcttagctaggtattggggatttattaatcaattagcaaccgtgtgtgagatgagattaaattcttgcaatcgacctaattat |
137 |
Q |
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| T |
7025750 |
accatgtgagataggcttcttagctaggtattagggatttatta-tcaattagcaaccgtgtgtgagattagatt-----cttgcattcaacccaattat |
7025843 |
T |
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| Q |
138 |
gtactcagtctcccaaaaagagaaggccacaa-ctgactgtttctttgaacaccaataatttggtgcagctagaatccctaacaaggat--cataagtca |
234 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7025844 |
gtactcagtctcccaaaaatagaaggccacaagctgactgttcctttgaacaccaataatttggtgcagctagaatccctaacaaggattatataagtcc |
7025943 |
T |
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| Q |
235 |
acctatcaaccttatgtccaaagcagtctgcaccagaaaattcctgcaggcttac |
289 |
Q |
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||||||| |||||||||||||||||||||||||||||||| || ||||| |||| |
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| T |
7025944 |
tcctatcagccttatgtccaaagcagtctgcaccagaaaatcccagcaggattac |
7025998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 38 - 289
Target Start/End: Original strand, 7056240 - 7056484
Alignment:
| Q |
38 |
accatgtgagataggcttcttagctaggtattggggatttattaatcaattagcaaccgtgtgtgagatgagattaaattcttgcaatcgacctaattat |
137 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| |||||| || |||||||||| |
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| T |
7056240 |
accacgtgagataggcttcttagctaggtattagggatttatta-tcaattagcaaccgtgtgtgagattagatt-----cttgcattcaacctaattat |
7056333 |
T |
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| Q |
138 |
gtactcagtctcccaaaaagagaaggccacaa-ctgactgtttctttgaacaccaataatttggtgcagctagaatccctaacaaggatcataagtcaac |
236 |
Q |
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||||||||| ||||||||||| ||||||||| ||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7056334 |
gtactcagtatcccaaaaaga--aggccacaaactgactgttcctattaacaccaataatttggtgcagctagaatccctaacaaggatcataagtcctc |
7056431 |
T |
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| Q |
237 |
ctatcaaccttatgtccaaagcagtctgcaccagaaaattcctgcaggcttac |
289 |
Q |
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|||||| |||||||||||||||||||||||||||||||| || |||| ||||| |
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| T |
7056432 |
ctatcagccttatgtccaaagcagtctgcaccagaaaatcccagcagtcttac |
7056484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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