View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9988_low_9 (Length: 323)
Name: NF9988_low_9
Description: NF9988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9988_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 51 - 313
Target Start/End: Original strand, 39395637 - 39395899
Alignment:
| Q |
51 |
attcacagtttacgactagttggtggatcaccaaaacccttgttgtcatcaacaattattgtcattccctctttattgtcatcaacattnnnnnnnntca |
150 |
Q |
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| T |
39395637 |
attcacaattcacgaccagttggtggatcaccaaaacccttgttgtcatcaacaattgttgtcattccctctttattgtcatcaacattaaaaaaaatca |
39395736 |
T |
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| Q |
151 |
caagttcaaccggattaattatagatgcttaacaacaacgaaaacccttaaattaaattagaatcggtattcatagttggtggtcgaatccgcttagaca |
250 |
Q |
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| T |
39395737 |
caagttcaaccggattaattatagatgcttaacaacaacaaaaacccttaaattaaattagaatcggtattcatagttggtggtcgaatccgcttaaaca |
39395836 |
T |
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| Q |
251 |
tcgactgactgttgtgtttgattgacttgactgtattcttttcgttattatttcggtacatct |
313 |
Q |
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| T |
39395837 |
tcgactgactgttgtgtttgattgacttgactgtattctttccgtgattattttggcacatct |
39395899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 290
Target Start/End: Complemental strand, 16178583 - 16178499
Alignment:
| Q |
214 |
tcggtattcatagttggtggtcgaatccgct--------tagacatcgactgactgttgtgtttgattgacttgactgtattctt |
290 |
Q |
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| T |
16178583 |
tcggtattcatagttggtggtctaacccgctcttatgtataggcatcgactgactgttgtgtatgattgacttgactgtattctt |
16178499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 35929275 - 35929308
Alignment:
| Q |
258 |
actgttgtgtttgattgacttgactgtattcttt |
291 |
Q |
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| T |
35929275 |
actgttgtgtatgattgacttgactgtattcttt |
35929308 |
T |
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