View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9989_high_3 (Length: 407)
Name: NF9989_high_3
Description: NF9989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9989_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 129 - 406
Target Start/End: Original strand, 9139945 - 9140222
Alignment:
| Q |
129 |
cacttcaaagtgttctattctttcaaattttcaatagattgagcggcacaaggttctcaaaaggacgaataaatgaacaaaaggcaacagagaatatgct |
228 |
Q |
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| T |
9139945 |
cacttcaaagtgttctattctttcaaattttcaatagatttagcggtacaaggttctctaaaagacgaataaatgaacaaaaggcaacagagaatatgct |
9140044 |
T |
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| Q |
229 |
ttatgaactaataatctgatactttaactttgaacaaatacacatcctcccattcaacggcattgccataagatatttgaaaataaaataaaatataatg |
328 |
Q |
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| T |
9140045 |
ttacgaactaataatctgatactttaactttgaacaaatacacatcctcccattcaacggcattgccataagatatttgaaaataaaataaaatataatg |
9140144 |
T |
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| Q |
329 |
gtcatgtttaattaatcctaaatttccatgtccaaacaaatggcctatttcagtgtcaaagtgacgcatcaacctatg |
406 |
Q |
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| T |
9140145 |
gtcatgtttaattaatcctaaatttcaatgtccaaacaaatggcctatttcagtgtcaaagtgacgcatcaacctatg |
9140222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 9139782 - 9139814
Alignment:
| Q |
7 |
cttgtatggctctgatgaatcggcgatacggcc |
39 |
Q |
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| T |
9139782 |
cttgtatggctctgatgaatcggcgatacggcc |
9139814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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