View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9989_high_4 (Length: 350)

Name: NF9989_high_4
Description: NF9989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9989_high_4
NF9989_high_4
[»] chr8 (13 HSPs)
chr8 (1-344)||(2891268-2891617)
chr8 (1-344)||(3143645-3143995)
chr8 (1-295)||(2794617-2794897)
chr8 (1-147)||(2876820-2876960)
chr8 (222-344)||(2877036-2877158)
chr8 (47-132)||(8627613-8627698)
chr8 (61-132)||(3495433-3495504)
chr8 (61-132)||(14389007-14389078)
chr8 (218-277)||(3495580-3495639)
chr8 (68-130)||(3500544-3500606)
chr8 (214-253)||(3500680-3500719)
chr8 (214-248)||(8627518-8627552)
chr8 (304-344)||(2794556-2794596)
[»] chr4 (1 HSPs)
chr4 (184-249)||(13005652-13005716)


Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 2891268 - 2891617
Alignment:
Q  1 attaccctcgtctgttttaaattcaaacagatccagttcatcatcatcaccatcactatagcccttgttcaaaagtacagtgccatcttgcagcttacca 100  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||    
T  2891268 attaccctcgtctgttttaaattcaaacagatccgcttcatcatcatcaccatcattatatcccttgttcaaaaatacagtgccatcttgcagcttacca 2891367  T
Q  101 attagttttactacaaaaatgcaaaatgaggagacaacacatcagaaacga--cactaaatccattnnnnnnnngagccatcatttcataatatattagc 198  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||  |||||||||||||        |||||||||| |||||||||||||||    
T  2891368 attagttttactacaaaaatgcaaaatgaggagataacacatcagaaccgatgcactaaatccattaaaaaagagagccatcatatcataatatattagc 2891467  T
Q  199 aatcaatcaatgatgaatgatgatttacatttcacaagagctccctcatttggacg----gtcagctccttctccttccttgagaagcagcttacgaaaa 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||| ||||| |||||    
T  2891468 aatcaatcaatgatgaatgatgatttacatttcacaagagctccctcatttggacggtacgtcagctccttctccttccttgagaagctgcttatgaaaa 2891567  T
Q  295 gttgctttgttccaagaaactaactcgagagtgatctgcaatgttgcgtt 344  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  2891568 gttgctttgttccaagaaactaacctgagagtgatctgcaatgttgcgtt 2891617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 3143995 - 3143645
Alignment:
Q  1 attaccctcgtctgttttaaattcaaacagatccagttcatcatcatcaccatcactatagcccttgttcaaaagtacagtgccatcttgcagcttacca 100  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||    
T  3143995 attaccctcgtctgttttaaattcaaacagatccgcttcatcatcatcaccatcattatatcccttgttcaaaaatacagtgccatcttgcagcttacca 3143896  T
Q  101 attagttttactacaaaaatgcaaaatgaggagacaacacatcagaaacga--cactaaatccattnnnnnnnn-gagccatcatttcataatatattag 197  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||  |||||||||||||         |||||||||| ||||||||||||||    
T  3143895 attagttttactacaaaaatgcaaaatgaggagataacacatcagaaccgatgcactaaatccattaaaaaaaaagagccatcatatcataatatattag 3143796  T
Q  198 caatcaatcaatgatgaatgatgatttacatttcacaagagctccctcatttggacgg----tcagctccttctccttccttgagaagcagcttacgaaa 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||| ||||| ||||    
T  3143795 caatcaatcaatgatgaatgatgatttacatttcacaagagctccctcatttggacggtacatcagctccttctccttccttgagaagctgcttatgaaa 3143696  T
Q  294 agttgctttgttccaagaaactaactcgagagtgatctgcaatgttgcgtt 344  Q
    ||||||||||| |||||||||||||  ||||||||||||||||||||||||    
T  3143695 agttgctttgtaccaagaaactaacctgagagtgatctgcaatgttgcgtt 3143645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 2794897 - 2794617
Alignment:
Q  1 attaccctcgtctgttttaaattcaaacagatccagttcatcatcatcaccatcactatagcccttgttcaaaagtacagtgccatcttgcagcttacca 100  Q
    ||||||||| |||||||||||||||||||| |||| |||||||      ||||||||||||||||| || |||| |||||||||||||||||||||||||    
T  2794897 attaccctcatctgttttaaattcaaacagctccacttcatca------ccatcactatagcccttcttaaaaaatacagtgccatcttgcagcttacca 2794804  T
Q  101 attagttttactacaaaaatgcaaaatgaggagacaacacatcagaaacga--cactaaatcca-ttnnnnnnnngagccatcatttcataatatattag 197  Q
    |||||||| ||||||||||||||||||||||| | | |||||||||| |||  ||||||||||| ||         ||||||||| ||||||||||||||    
T  2794803 attagtttcactacaaaaatgcaaaatgaggatatatcacatcagaaccgatgcactaaatccatttaaaaagaacagccatcatatcataatatattag 2794704  T
Q  198 caatcaatcaatgatgaatgatgatttacatttcacaagagctccctcatttggacggtcagctccttctccttccttgagaagcagcttacgaaaag 295  Q
    | || |||||          |||||||||||||||||||||||||||||||||||| |||  | ||||||||||||||||| | || |||||||||||    
T  2794703 c-atgaatca----------atgatttacatttcacaagagctccctcatttggacagtcgtccccttctccttccttgaggaccatcttacgaaaag 2794617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 2876820 - 2876960
Alignment:
Q  1 attaccctcgtctgttttaaattcaaacagatccagttcatcatcatcaccatcactatagcccttgttcaaaagtacagtgccatcttgcagcttacca 100  Q
    |||||||||||||||||||||||||||||| |||| |||||      ||||||||||||| ||||| || |||| |||||||||||||||||||||||||    
T  2876820 attaccctcgtctgttttaaattcaaacagctccacttcat------caccatcactatatcccttcttaaaaaatacagtgccatcttgcagcttacca 2876913  T
Q  101 attagttttactacaaaaatgcaaaatgaggagacaacacatcagaa 147  Q
    |||||||| ||||||||||||||||||||||| | | ||||||||||    
T  2876914 attagtttcactacaaaaatgcaaaatgaggatatatcacatcagaa 2876960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 222 - 344
Target Start/End: Original strand, 2877036 - 2877158
Alignment:
Q  222 tttacatttcacaagagctccctcatttggacggtcagctccttctccttccttgagaagcagcttacgaaaagttgctttgttccaagaaactaactcg 321  Q
    |||||||||||||||||||||||||||||||| |||  ||||||||||||||||||| | || ||||||||||| |  ||  ||||||||||| ||||||    
T  2877036 tttacatttcacaagagctccctcatttggacagtcgtctccttctccttccttgaggaccatcttacgaaaaggtcattccttccaagaaacaaactcg 2877135  T
Q  322 agagtgatctgcaatgttgcgtt 344  Q
    ||| | |||||||||||||||||    
T  2877136 agaataatctgcaatgttgcgtt 2877158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 8627698 - 8627613
Alignment:
Q  47 tcaccatcactatagcccttgttcaaaagtacagtgccatcttgcagcttaccaattagttttactacaaaaatgcaaaatgagga 132  Q
    ||||||||| | |||||||| || |||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  8627698 tcaccatcattgtagcccttcttaaaaaatacagtgccatcttgcagcttaccaattagtttcactacgaaaatgcaaaatgagga 8627613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 3495433 - 3495504
Alignment:
Q  61 gcccttgttcaaaagtacagtgccatcttgcagcttaccaattagttttactacaaaaatgcaaaatgagga 132  Q
    |||||| |||||||  |||||||||||||||| ||||||||||||||| ||| |||| ||||||||||||||    
T  3495433 gcccttcttcaaaaagacagtgccatcttgcaacttaccaattagtttcactgcaaagatgcaaaatgagga 3495504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 14389007 - 14389078
Alignment:
Q  61 gcccttgttcaaaagtacagtgccatcttgcagcttaccaattagttttactacaaaaatgcaaaatgagga 132  Q
    |||||| ||||||| ||||||| ||||||||| ||||||||| ||||| ||| |||| ||||||||||||||    
T  14389007 gcccttcttcaaaaatacagtgtcatcttgcaacttaccaataagtttcacttcaaagatgcaaaatgagga 14389078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 3495580 - 3495639
Alignment:
Q  218 atgatttacatttcacaagagctccctcatttggacggtcagctccttctccttccttga 277  Q
    ||||||||||||| |||| |||||| ||||||||||| |||  |||||||||||||||||    
T  3495580 atgatttacattttacaacagctccatcatttggacgctcatatccttctccttccttga 3495639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 3500544 - 3500606
Alignment:
Q  68 ttcaaaagtacagtgccatcttgcagcttaccaattagttttactacaaaaatgcaaaatgag 130  Q
    ||||||| || || |||| |||||||| ||||||||||||| |||||| ||||||||||||||    
T  3500544 ttcaaaaatatagagccaccttgcagcctaccaattagtttcactacacaaatgcaaaatgag 3500606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 253
Target Start/End: Original strand, 3500680 - 3500719
Alignment:
Q  214 aatgatgatttacatttcacaagagctccctcatttggac 253  Q
    |||||||||||||||||||||| || ||||||||||||||    
T  3500680 aatgatgatttacatttcacaacagatccctcatttggac 3500719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 8627552 - 8627518
Alignment:
Q  214 aatgatgatttacatttcacaagagctccctcatt 248  Q
    |||||||||||||||||||||| ||||||||||||    
T  8627552 aatgatgatttacatttcacaacagctccctcatt 8627518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 2794596 - 2794556
Alignment:
Q  304 ttccaagaaactaactcgagagtgatctgcaatgttgcgtt 344  Q
    ||||||||||| ||||||||| | |||||||||||||||||    
T  2794596 ttccaagaaacaaactcgagaataatctgcaatgttgcgtt 2794556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 13005716 - 13005652
Alignment:
Q  184 tcataatatattagcaatcaatcaatgatgaatgatgatttacatttcacaagagctccctcattt 249  Q
    |||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||  |||||||    
T  13005716 tcataatatattagca-tcaatgaattatgaatgatgatttacatttcacaagagctttctcattt 13005652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University