View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9989_low_1 (Length: 687)

Name: NF9989_low_1
Description: NF9989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9989_low_1
NF9989_low_1
[»] chr4 (4 HSPs)
chr4 (108-314)||(53350799-53351009)
chr4 (525-599)||(53350424-53350495)
chr4 (394-504)||(53350590-53350698)
chr4 (598-679)||(53350291-53350372)
[»] chr5 (20 HSPs)
chr5 (71-174)||(26032698-26032807)
chr5 (108-177)||(38181379-38181448)
chr5 (108-177)||(38189683-38189752)
chr5 (108-177)||(38216908-38216977)
chr5 (331-383)||(26032483-26032535)
chr5 (242-286)||(38456899-38456943)
chr5 (241-283)||(38171901-38171943)
chr5 (241-283)||(38181535-38181577)
chr5 (241-283)||(38189554-38189596)
chr5 (241-283)||(38208761-38208803)
chr5 (241-283)||(38216779-38216821)
chr5 (241-286)||(26032558-26032603)
chr5 (108-177)||(38456740-38456809)
chr5 (334-383)||(38456970-38457019)
chr5 (331-383)||(38171822-38171874)
chr5 (331-383)||(38181606-38181658)
chr5 (331-383)||(38189473-38189525)
chr5 (331-383)||(38208832-38208884)
chr5 (331-383)||(38216698-38216750)
chr5 (108-177)||(38208603-38208674)


Alignment Details
Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 108 - 314
Target Start/End: Complemental strand, 53351009 - 53350799
Alignment:
Q  108 tgaaaaagggaagaaggcaatttcgttagaggacgatgttgaagaaaaccttgatgacttgatggatttgtgtcttttgattgatttcagttcatatgat 207  Q
    ||||||||| |||||| ||||||| ||  ||||||||||||||| ||||||||||||||||||||||  ||||||||||||||| ||||||| || | |     
T  53351009 tgaaaaaggaaagaagccaatttctttgaaggacgatgttgaagcaaaccttgatgacttgatggatccgtgtcttttgattgacttcagttgattttac 53350910  T
Q  208 aac-at----acagtaacttgcatgacaagcttccattcgatataaaaagcttatagtgtttgcaacacaacttttctgtatttagtgttttttcttctg 302  Q
    ||| ||    |||||||||||||||||||||| |||  |||| |||||||||||  ||||||||  | ||||||||| ||||||||| |||||  |||||    
T  53350909 aacgatgataacagtaacttgcatgacaagctcccacacgatgtaaaaagcttacggtgtttgcgtcgcaacttttcagtatttagt-tttttctttctg 53350811  T
Q  303 agaattgagttg 314  Q
    ||||||||||||    
T  53350810 agaattgagttg 53350799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 525 - 599
Target Start/End: Complemental strand, 53350495 - 53350424
Alignment:
Q  525 aattactcaaatttgaaaaattattgttcacatattgtatatttttcagcccctccaagaaaaaagttcctagct 599  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  53350495 aattactcaaatttgaaaaatt---gttcacatattgtatatttttcagcccctccaaggaaaaagttcctagct 53350424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 394 - 504
Target Start/End: Complemental strand, 53350698 - 53350590
Alignment:
Q  394 attactcgttttggtcttagatctgtagctgagagaaaaatcatggttatcctactaacttttgtttggaggtaactatatataggacagaatatgacaa 493  Q
    ||||||| ||||||||||||| |||| |||||||| ||||||||||||||||| ||||| ||  ||||||||||||  |||| |||||||| | ||||||    
T  53350698 attactctttttggtcttagaactgtggctgagaggaaaatcatggttatccttctaacattattttggaggtaac--tatacaggacagagtgtgacaa 53350601  T
Q  494 aactgatgtat 504  Q
    |||||||||||    
T  53350600 aactgatgtat 53350590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 598 - 679
Target Start/End: Complemental strand, 53350372 - 53350291
Alignment:
Q  598 ctttcatgttcttagcttttgccattgttctctttgaactcttgtttttgttttgagtccttgccctgctcattgtgtctgt 679  Q
    |||||||||||||   |||||| |||||||||||||||||||||||| |||||||||||| | | |||||| ||||||||||    
T  53350372 ctttcatgttcttgcattttgctattgttctctttgaactcttgtttctgttttgagtccctcctctgctcgttgtgtctgt 53350291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 71 - 174
Target Start/End: Complemental strand, 26032807 - 26032698
Alignment:
Q  71 atgctaggcatgtgcatttgtctgagaccaatttcgttga---aaaagggaagaaggcaatttcgttagaggacgatgttgaagaaaa---ccttgatga 164  Q
    ||||||||| |||| ||||||||||||| |||||||||||   ||||||||||||| | |||||||| |||||||||||||||| |||   |||||||||    
T  26032807 atgctaggcgtgtgtatttgtctgagacaaatttcgttgatgaaaaagggaagaagcctatttcgttggaggacgatgttgaagcaaacctccttgatga 26032708  T
Q  165 cttgatggat 174  Q
    ||| ||||||    
T  26032707 cttcatggat 26032698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 38181379 - 38181448
Alignment:
Q  108 tgaaaaagggaagaaggcaatttcgttagaggacgatgttgaagaaaaccttgatgacttgatggatttg 177  Q
    |||||||||||||||| ||||||| || |||||||||||||||| |||||||||||| || |||||||||    
T  38181379 tgaaaaagggaagaagccaatttcattggaggacgatgttgaagcaaaccttgatgatttcatggatttg 38181448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 108 - 177
Target Start/End: Complemental strand, 38189752 - 38189683
Alignment:
Q  108 tgaaaaagggaagaaggcaatttcgttagaggacgatgttgaagaaaaccttgatgacttgatggatttg 177  Q
    |||||||||||||||| ||||||| || |||||||||||||||| |||||||||||| || |||||||||    
T  38189752 tgaaaaagggaagaagccaatttcattggaggacgatgttgaagcaaaccttgatgatttcatggatttg 38189683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 108 - 177
Target Start/End: Complemental strand, 38216977 - 38216908
Alignment:
Q  108 tgaaaaagggaagaaggcaatttcgttagaggacgatgttgaagaaaaccttgatgacttgatggatttg 177  Q
    |||||||||||||||| ||||||| || |||||||||||||||| |||||||||||| || |||||||||    
T  38216977 tgaaaaagggaagaagccaatttcattggaggacgatgttgaagcaaaccttgatgatttcatggatttg 38216908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 331 - 383
Target Start/End: Complemental strand, 26032535 - 26032483
Alignment:
Q  331 gtctaaacgattttatttgatagatctattaaattaattctactttatgcaat 383  Q
    ||||||||||| |||||||| |||| |||||||||||||||||||||||||||    
T  26032535 gtctaaacgatgttatttgacagatgtattaaattaattctactttatgcaat 26032483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 38456899 - 38456943
Alignment:
Q  242 gatataaaaagcttatagtgtttgcaacacaacttttctgtattt 286  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  38456899 gatataaaaagcttatattgtttgcaacacaacttttctgtattt 38456943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 241 - 283
Target Start/End: Complemental strand, 38171943 - 38171901
Alignment:
Q  241 cgatataaaaagcttatagtgtttgcaacacaacttttctgta 283  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  38171943 cgatataaaaagcttatagtgtttgcaacacaatttttctgta 38171901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 241 - 283
Target Start/End: Original strand, 38181535 - 38181577
Alignment:
Q  241 cgatataaaaagcttatagtgtttgcaacacaacttttctgta 283  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  38181535 cgatataaaaagcttatagtgtttgcaacacaatttttctgta 38181577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 241 - 283
Target Start/End: Complemental strand, 38189596 - 38189554
Alignment:
Q  241 cgatataaaaagcttatagtgtttgcaacacaacttttctgta 283  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  38189596 cgatataaaaagcttatagtgtttgcaacacaatttttctgta 38189554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 241 - 283
Target Start/End: Original strand, 38208761 - 38208803
Alignment:
Q  241 cgatataaaaagcttatagtgtttgcaacacaacttttctgta 283  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  38208761 cgatataaaaagcttatagtgtttgcaacacaatttttctgta 38208803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 241 - 283
Target Start/End: Complemental strand, 38216821 - 38216779
Alignment:
Q  241 cgatataaaaagcttatagtgtttgcaacacaacttttctgta 283  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  38216821 cgatataaaaagcttatagtgtttgcaacacaatttttctgta 38216779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 241 - 286
Target Start/End: Complemental strand, 26032603 - 26032558
Alignment:
Q  241 cgatataaaaagcttatagtgtttgcaacacaacttttctgtattt 286  Q
    |||||||||||||||||||||||||||||||||  |||||||||||    
T  26032603 cgatataaaaagcttatagtgtttgcaacacaatgtttctgtattt 26032558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 38456740 - 38456809
Alignment:
Q  108 tgaaaaagggaagaaggcaatttcgttagaggacgatgttgaagaaaaccttgatgacttgatggatttg 177  Q
    |||||| ||||||||| ||||||| || ||||||||| |||||| |||||||||||| || |||||||||    
T  38456740 tgaaaatgggaagaagccaatttcattggaggacgattttgaagcaaaccttgatgatttcatggatttg 38456809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 334 - 383
Target Start/End: Original strand, 38456970 - 38457019
Alignment:
Q  334 taaacgattttatttgatagatctattaaattaattctactttatgcaat 383  Q
    |||||||| |||||||| |||| |||||||||||||||||||||||||||    
T  38456970 taaacgatgttatttgacagatatattaaattaattctactttatgcaat 38457019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 331 - 383
Target Start/End: Complemental strand, 38171874 - 38171822
Alignment:
Q  331 gtctaaacgattttatttgatagatctattaaattaattctactttatgcaat 383  Q
    ||||||||||| |||||||| | ||||||||| ||||||| ||||||||||||    
T  38171874 gtctaaacgatgttatttgacaaatctattaagttaattccactttatgcaat 38171822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 331 - 383
Target Start/End: Original strand, 38181606 - 38181658
Alignment:
Q  331 gtctaaacgattttatttgatagatctattaaattaattctactttatgcaat 383  Q
    |||||||||||  ||||||| | |||||| |||||||||||||||||||||||    
T  38181606 gtctaaacgatactatttgacaaatctataaaattaattctactttatgcaat 38181658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 331 - 383
Target Start/End: Complemental strand, 38189525 - 38189473
Alignment:
Q  331 gtctaaacgattttatttgatagatctattaaattaattctactttatgcaat 383  Q
    |||||||||||  ||||||| | |||||| |||||||||||||||||||||||    
T  38189525 gtctaaacgatactatttgacaaatctataaaattaattctactttatgcaat 38189473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 331 - 383
Target Start/End: Original strand, 38208832 - 38208884
Alignment:
Q  331 gtctaaacgattttatttgatagatctattaaattaattctactttatgcaat 383  Q
    |||||||||||  ||||||| | |||||| |||||||||||||||||||||||    
T  38208832 gtctaaacgatactatttgacaaatctataaaattaattctactttatgcaat 38208884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 331 - 383
Target Start/End: Complemental strand, 38216750 - 38216698
Alignment:
Q  331 gtctaaacgattttatttgatagatctattaaattaattctactttatgcaat 383  Q
    |||||||||||  ||||||| | |||||| |||||||||||||||||||||||    
T  38216750 gtctaaacgatactatttgacaaatctataaaattaattctactttatgcaat 38216698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 38208603 - 38208674
Alignment:
Q  108 tgaaaaagggaagaaggcaatttcgttagagga-cgat-gttgaagaaaaccttgatgacttgatggatttg 177  Q
    |||||||||||||||| ||||||| || ||||| |||| ||||||| |||||||||||| || |||||||||    
T  38208603 tgaaaaagggaagaagccaatttcattggaggaccgatcgttgaagcaaaccttgatgatttcatggatttg 38208674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University