View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9989_low_10 (Length: 309)
Name: NF9989_low_10
Description: NF9989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9989_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 17 - 299
Target Start/End: Complemental strand, 46929639 - 46929357
Alignment:
| Q |
17 |
aagatcttcaacttctctgattgaactaaatcctacttgtgatgttaatcttctattttgccgctgaccaatgtcttggctgtgacgcctttcccggttt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
46929639 |
aagatcttcaacttctctgattgaactaaatcctacttgtgatgttaatcttctattttgctgctgaccaatgtcttggctgtgacgcctttcccggttt |
46929540 |
T |
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| Q |
117 |
tgaaccatcaaagaagacgactcatgtcttcttaagagacctgtgtcaggaggactattgacctccctgcgtcttctcagatggtgacgtagatctaagt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46929539 |
tgaaccatcaaagaagacgactcatgtcttcttaagagacctgtgtcaggaggactattgacctccctgcgtcttctcagatggtgacgtagatctaagt |
46929440 |
T |
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| Q |
217 |
cagagtaatcacaagcagccatctcagaagtggacattcgaatccttttcctggaaaatatagtatctaagaccatctctctg |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46929439 |
cagagtaatcacaagcagccatctcagaagtggacattcgaatccttttcctggaaaatatagtatctaagaccatctctctg |
46929357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 299
Target Start/End: Complemental strand, 47166844 - 47166562
Alignment:
| Q |
17 |
aagatcttcaacttctctgattgaactaaatcctacttgtgatgttaatcttctattttgccgctgaccaatgtcttggctgtgacgcctttcccggttt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||| |
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| T |
47166844 |
aagatcttcaacttctctgattgaactaaatcctacttgtgatgttaatcttctattttgccgctgaccaatgtcttgcctttgatgcctttcccggttt |
47166745 |
T |
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| Q |
117 |
tgaaccatcaaagaagacgactcatgtcttcttaagagacctgtgtcaggaggactattgacctccctgcgtcttctcagatggtgacgtagatctaagt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
47166744 |
tgaaccatcaaagaagacgactcatgtcttcttaagagacctgtgtcaggaggactattgacctccctgtgtcttctcagatggtgacgtagatctaagt |
47166645 |
T |
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| Q |
217 |
cagagtaatcacaagcagccatctcagaagtggacattcgaatccttttcctggaaaatatagtatctaagaccatctctctg |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47166644 |
cagagtaatcacaagcagccatctcagaagtggacattcgaatacttttcctggaaaatatagtatctaagaccatctctctg |
47166562 |
T |
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