View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9989_low_11 (Length: 258)
Name: NF9989_low_11
Description: NF9989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9989_low_11 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: scaffold0341 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 898 - 666
Alignment:
| Q |
11 |
caaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatatagctgcatcgggggaaagtgaccttaaatatgctgt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
898 |
caaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatttagctgcatcgggggaaagtgaccttaaatatgctgt |
799 |
T |
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| Q |
111 |
aggaaatgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggat |
210 |
Q |
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| T |
798 |
aggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggat |
699 |
T |
|
| Q |
211 |
aaatctatcaaagaaatcccaaattgttgtgac |
243 |
Q |
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| T |
698 |
aaatctatcaaagaaatcccaaattgttgtgac |
666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 8551 - 8319
Alignment:
| Q |
11 |
caaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatatagctgcatcgggggaaagtgaccttaaatatgctgt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8551 |
caaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatttagctgcatcgggggaaagtgaccttaaatatgctgt |
8452 |
T |
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| Q |
111 |
aggaaatgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggat |
210 |
Q |
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| T |
8451 |
aggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggat |
8352 |
T |
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| Q |
211 |
aaatctatcaaagaaatcccaaattgttgtgac |
243 |
Q |
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| T |
8351 |
aaatctatcaaagaaatcccaaattgttgtgac |
8319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 6506873 - 6506641
Alignment:
| Q |
11 |
caaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatatagctgcatcgggggaaagtgaccttaaatatgctgt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6506873 |
caaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatttagctgcatcgggggaaagtgaccttaaatatgctgt |
6506774 |
T |
|
| Q |
111 |
aggaaatgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggat |
210 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6506773 |
aggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggat |
6506674 |
T |
|
| Q |
211 |
aaatctatcaaagaaatcccaaattgttgtgac |
243 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
6506673 |
aaatctatcaaagaaatcccaaattgttgtgac |
6506641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 6517168 - 6516962
Alignment:
| Q |
22 |
gaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatatagctgcatcgggggaaagtgaccttaaatatgctgtaggaaatgatg |
121 |
Q |
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||||||||||||||||||| || ||||||||||||| ||||||||| ||||| ||||||||| ||||| ||||||||||||||||||||||||| ||||| |
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| T |
6517168 |
gaagatgaatttgataaagtgcggaaaaatttgttggataatttaagaaatagagctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatg |
6517069 |
T |
|
| Q |
122 |
tgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaa |
221 |
Q |
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| ||||||||||||||||||||||||||| || ||| | |||||||||||||||||||| | ||||||| |||||||| ||||||| | |||||||||| |
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| T |
6517068 |
aggttggtccaaataataatcaaaccatatatggtctagctcaatgcacacctgatttgtttaaaacattttgtgatgattgtttggttcaatctatcaa |
6516969 |
T |
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| Q |
222 |
agaaatc |
228 |
Q |
| |
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|||||| |
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| T |
6516968 |
tgaaatc |
6516962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 22 - 232
Target Start/End: Complemental strand, 6512769 - 6512559
Alignment:
| Q |
22 |
gaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatatagctgcatcgggggaaagtgaccttaaatatgctgtaggaaatgatg |
121 |
Q |
| |
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||||||||||||||||||| ||||||||||| ||| ||||||||| ||||| |||| |||| || || |||||||||||||||||||| |||| ||||| |
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| T |
6512769 |
gaagatgaatttgataaagtactgaaaaatttattggataatttaagaaatagagcttcatcaggtgatagtgaccttaaatatgctgttggaagtgatg |
6512670 |
T |
|
| Q |
122 |
tgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaa |
221 |
Q |
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| |||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||| || ||||||| ||||| ||||||| ||||||||||| |
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| T |
6512669 |
aggttggtcaaaataataatcaaactatatatgctcttgttcaatgcacacctgatttgtctaaatcattgtgcgatgattgtttggtaaaatctatcaa |
6512570 |
T |
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| Q |
222 |
agaaatcccaa |
232 |
Q |
| |
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|| |||||||| |
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| T |
6512569 |
agcaatcccaa |
6512559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 63 - 240
Target Start/End: Original strand, 6521908 - 6522085
Alignment:
| Q |
63 |
tttaaaaaatatagctgcatcgggggaaagtgaccttaaatatgctgtaggaaatgatgtgattggtccaaataataatcaaaccatatttgctcttgtt |
162 |
Q |
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||||| ||||| ||||||||| ||||| ||||||||||||||||||||||||| ||||| | ||||||||| |||||| |||||||||| || ||||||| |
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| T |
6521908 |
tttaagaaatagagctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaagtaataaccaaaccatatatggtcttgtt |
6522007 |
T |
|
| Q |
163 |
caatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgt |
240 |
Q |
| |
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||||||||||||||||||||| ||||||| |||||||| ||||||| | |||||||||||||||| ||||||||||| |
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| T |
6522008 |
caatgcacacctgatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgt |
6522085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 47759955 - 47759914
Alignment:
| Q |
141 |
tcaaaccatatttgctcttgttcaatgcacacctgatttgtc |
182 |
Q |
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| T |
47759955 |
tcaaaccatatatggtcttgttcagtgcacacctgatttgtc |
47759914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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