View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9989_low_3 (Length: 493)
Name: NF9989_low_3
Description: NF9989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9989_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 19 - 480
Target Start/End: Original strand, 42014574 - 42015035
Alignment:
| Q |
19 |
cacaatactatagaaaaaacgagaataatcaaatccattcaattcgaaatctatatagttttttcacatttaatttctgctatgattctaaacatatcaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42014574 |
cacaatactatagaaaaaacgagaataatcaaatccattcaattcgaaatctatataggtttttcacatttaatttctgctatgattctaaatatatcaa |
42014673 |
T |
|
| Q |
119 |
caccttcattctctcgcatacttcctcacccttcttcttctttcaaactctctgaaacttattccaaccgcaacaacgcttcttatcctgttttcatttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42014674 |
caccttcattctctcgcatacttcctcacccttcttcttctttcaaactctctgaaacttattccaaccgcaacaacgcttcttatcctgttttcatttt |
42014773 |
T |
|
| Q |
219 |
cacaaaaccattgaaattcatcaacctcaaagcttccataagcgaaagccaaaatgaaacatctaactctaacaacttattggatcaacagcttcttctc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42014774 |
cacaaaaccattgaaattcatcaacctcaaagcttccataagcgaaagccaaaatgaaacatctaactctaacaacttattggatcaacagcttcttctc |
42014873 |
T |
|
| Q |
319 |
cgagttgccgccaccgccaaagacgccgacgaagcattgcagttaatcgctgacaactcttccactaacggtggtgttgtttctacttctgattgttgct |
418 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42014874 |
cgagtcgccgccaccgccaaagacgccgacgaagcattgcagttaatcgctgacaactcttccactaacggtggtgttgtttctacttctgattgttgct |
42014973 |
T |
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| Q |
419 |
ctattatttctgctgcgcttgaaaggaataatccacaacttgctttgtctgttttttactct |
480 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42014974 |
ctattatttctgctgcgcttgaaaggaataatccacaacttgctttgtctgttttttactct |
42015035 |
T |
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