View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9989_low_4 (Length: 438)
Name: NF9989_low_4
Description: NF9989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9989_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-119; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 199 - 424
Target Start/End: Complemental strand, 7767481 - 7767256
Alignment:
| Q |
199 |
agctgtttctccatagaaacttcttcgttgcagccctcgcatttaaacttcacatcaatatcttccaccgtagtgaaagaatctaaagcacttgaaagag |
298 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7767481 |
agctgtttctccatagaaacttcttcgttgcagccctcgcatttaaacttcgcatcaatatcttccaccgtagtgaaagaatctaaagcacttgaaagag |
7767382 |
T |
|
| Q |
299 |
tttctacattttctatttctagactcaaatcaatcaatggctcattagtgtcagaagagcgaccacagttgcaacaccgaagcctgctaaccaaactgcc |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7767381 |
tttctacattttctatttctagactcaaatcaatcaatggttcattagtgtcagaagagcgaccacagttgcaacaccgaagcctgctaaccaaactgcc |
7767282 |
T |
|
| Q |
399 |
tccaaaaactttctttacgatattat |
424 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
7767281 |
tccaaaaactttctttacgatattat |
7767256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 7767698 - 7767507
Alignment:
| Q |
10 |
gaagcagagataatgccctgaagtagatgaaattccagtatggacaacaactgcatataaatagtatttagacgatgcatcattggaaatggtgtaaggc |
109 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
7767698 |
gaagcagaaataatgccctgaagtagatgaaattccagtatggacaacaactgcatatagatagtatttagacgatgcatcattcgaaatggtgtaaggc |
7767599 |
T |
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| Q |
110 |
tgcatgtccaattgcatctggaaatcgatatgcttgtcaatcttttcaacaaaaaccccatctgtcttaaacctcttcaagtggaaggcagc |
201 |
Q |
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| T |
7767598 |
tgcatgtccaattgcaactggaaatcgatatgcttgtcaatcttttcaacaaaaaccccatctgtcttaaacctcttcaagtggaaggcagc |
7767507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 7773833 - 7773642
Alignment:
| Q |
10 |
gaagcagagataatgccctgaagtagatgaaattccagtatggacaacaactgcatataaatagtatttagacgatgcatcattggaaatggtgtaaggc |
109 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
7773833 |
gaagcagaaataatgccctgaagtagatgaaattccagtatggacaacaactgcatatagatagtatttagacgatgcatcattcgaaatggtgtaaggc |
7773734 |
T |
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| Q |
110 |
tgcatgtccaattgcatctggaaatcgatatgcttgtcaatcttttcaacaaaaaccccatctgtcttaaacctcttcaagtggaaggcagc |
201 |
Q |
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| T |
7773733 |
tgcatgtccaattgcaactggaaatcgatatgcttgtcaatcttttcaacaaaaaccccatctgtcttaaacctcttcaagtggaaggcagc |
7773642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 199 - 424
Target Start/End: Complemental strand, 7778451 - 7778226
Alignment:
| Q |
199 |
agctgtttctccatagaaacttcttcgttgcagccctcgcatttaaacttcacatcaatatcttccaccgtagtgaaagaatctaaagcacttgaaagag |
298 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
7778451 |
agctgtttctccatagaaacttcttcattgcagccctcacatttaaactttgcatcaatatcttctaccgttgtgaaagaatctaaagcacttgaaagag |
7778352 |
T |
|
| Q |
299 |
tttctacattttctatttctagactcaaatcaatcaatggctcattagtgtcagaagagcgaccacagttgcaacaccgaagcctgctaaccaaactgcc |
398 |
Q |
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| ||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7778351 |
tatctgcattttctatttctagactcaaatcaatcgatggctcattagtgtcggaagatcgaccacagttacaacaccgaagcctgctaaccaaactgcc |
7778252 |
T |
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| Q |
399 |
tccaaaaactttctttacgatattat |
424 |
Q |
| |
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|||||||||||||||||| ||||||| |
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| T |
7778251 |
tccaaaaactttctttacaatattat |
7778226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 202 - 424
Target Start/End: Complemental strand, 7773613 - 7773391
Alignment:
| Q |
202 |
tgtttctccatagaaacttcttcgttgcagccctcgcatttaaacttcacatcaatatcttccaccgtagtgaaagaatctaaagcacttgaaagagttt |
301 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| | ||||| | ||||||| |||||||||| |||||||||||||||||||| | |
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| T |
7773613 |
tgtttctccatagacacttcttcgttgcagccctcgcatttaaacttcgcgtcaatgtgttccaccatagtgaaagattctaaagcacttgaaagagtat |
7773514 |
T |
|
| Q |
302 |
ctacattttctatttctagactcaaatcaatcaatggctcattagtgtcagaagagcgaccacagttgcaacaccgaagcctgctaaccaaactgcctcc |
401 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| |||||||||| | ||||||||| |||||||||||| ||||||||||||| ||||| |
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| T |
7773513 |
ctacattttctatttctagactaaaatcaatcaatggctcattaatgtcagaagaacaaccacagttacaacaccgaagcatgctaaccaaactacctcc |
7773414 |
T |
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| Q |
402 |
aaaaactttctttacgatattat |
424 |
Q |
| |
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||||||||||||||| ||||||| |
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| T |
7773413 |
aaaaactttctttacaatattat |
7773391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 7778659 - 7778477
Alignment:
| Q |
19 |
ataatgccctgaagtagatgaaattccagtatggacaacaactgcatataaatagtatttagacgatgcatcattggaaatggtgtaaggctgcatgtcc |
118 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||| |||||||| | || ||||| |||||||||||||| || ||||||||||||||||||||| |
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| T |
7778659 |
ataatgccctgaagtagatgaaaatccagtatgcacaactactgcatacagatcatatttggacgatgcatcattcgatatggtgtaaggctgcatgtcc |
7778560 |
T |
|
| Q |
119 |
aattgcatctggaaatcgatatgcttgtcaatcttttcaacaaaaaccccatctgtcttaaacctcttcaagtggaaggcagc |
201 |
Q |
| |
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|| | || | |||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||| || ||||| ||||| |
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| T |
7778559 |
aactccaacgggaaattgatatgcttgtcaatcttttcaacaaaaatcccatatgtcttaaacctctttaaatggaacgcagc |
7778477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 199 - 381
Target Start/End: Original strand, 12753681 - 12753863
Alignment:
| Q |
199 |
agctgtttctccatagaaacttcttcgttgcagccctcgcatttaaacttcacatcaatatcttccaccgtagtgaaagaatctaaagcacttgaaagag |
298 |
Q |
| |
|
||||||||||||| ||| |||||||| ||||||||||| ||||||| ||| ||||||| | ||||||| | |||||||| || || |||||||||| || |
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| T |
12753681 |
agctgtttctccacagacacttcttcattgcagccctcacatttaagcttagcatcaatgttttccaccattgtgaaagactccaatgcacttgaaatag |
12753780 |
T |
|
| Q |
299 |
tttctacattttctatttctagactcaaatcaatcaatggctcattagtgtcagaagagcgaccacagttgcaacaccgaagc |
381 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||| |||||||| | |||||| |||||||||||| |
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| T |
12753781 |
aatctacattttctatttctagactcaggtcaatcaacggctcattagtgatggaagagcggctacagttacaacaccgaagc |
12753863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 199 - 381
Target Start/End: Original strand, 12816641 - 12816823
Alignment:
| Q |
199 |
agctgtttctccatagaaacttcttcgttgcagccctcgcatttaaacttcacatcaatatcttccaccgtagtgaaagaatctaaagcacttgaaagag |
298 |
Q |
| |
|
||||||||||||| ||| |||||||| ||||||||||| ||||||| ||| ||||||| | ||||||| | |||||||| || || |||||||||| || |
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| T |
12816641 |
agctgtttctccacagacacttcttcattgcagccctcacatttaagcttagcatcaatgttttccaccattgtgaaagactccaatgcacttgaaatag |
12816740 |
T |
|
| Q |
299 |
tttctacattttctatttctagactcaaatcaatcaatggctcattagtgtcagaagagcgaccacagttgcaacaccgaagc |
381 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| | |||||| |||||||||||| |
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| T |
12816741 |
aatctacattttctatttctagactcaggtcaatcaactgctcattagtgatggaagagcggctacagttacaacaccgaagc |
12816823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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