View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9989_low_5 (Length: 435)
Name: NF9989_low_5
Description: NF9989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9989_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 11 - 419
Target Start/End: Complemental strand, 38089331 - 38088925
Alignment:
| Q |
11 |
cagagactcaagtgagtataaaaacagtttatgaagaatccagttgggaggacagtgacccttctgttttcaaaatgactgttttgactgacaccattct |
110 |
Q |
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| T |
38089331 |
cagagactcaagtgagtacaaaaacagtttatgaagaatccagttgggaggacagtgacccttctgttttcaaaatgactgttttgactgacaccattct |
38089232 |
T |
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| Q |
111 |
aaaaggagaataccaaattacaaatggttatggtccagacaaagcttccaagatcatgagggtaattaagataccttattgtcttttttgaaaaagaaca |
210 |
Q |
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| T |
38089231 |
aaaaggagaataccaaattacaaatggttatggtccagacaaagcttccaagatcatgagggtaattaagataccttattgtcttttttgaaaaagaaca |
38089132 |
T |
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| Q |
211 |
agaaccagcattctagattttaagtgtatgtttaaattaacacgatcttaacaaaattacgatggagccgtgattctactagtatcaatatcaatacaac |
310 |
Q |
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| T |
38089131 |
agaaccagcattctagattttaagtgtatgtttaaattaacacgaccttaacaaaattacgatggagccgtgattctacgagtatcaatatcaatacaac |
38089032 |
T |
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| Q |
311 |
atgcactaaattattattatggtcgcgcgtcccaatttggttgattgttagtgaagtaatctcaattgttatttgtcctgcaatgttgaaacataaaaaa |
410 |
Q |
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| T |
38089031 |
atacactaaattattattatggtcgcgcgtcccaatttggttgattgttagtgaagtaatctcaattgttatttgtcctgcaatgttgaaac--aaaaaa |
38088934 |
T |
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| Q |
411 |
ctataatat |
419 |
Q |
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| T |
38088933 |
ctataatat |
38088925 |
T |
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