View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9989_low_6 (Length: 418)
Name: NF9989_low_6
Description: NF9989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9989_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 31432585 - 31432180
Alignment:
| Q |
1 |
caacacaaaagagcacaagttcaattatgtttacctatagatattggttaggacatgtggattaaaagtgactatgacattgcttactatatgaagagag |
100 |
Q |
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| T |
31432585 |
caacacaaaagagcacaagttcaattatgtttacctatagagtttggttaggacatgtggattaaaagtgacaatgccattgcttactatatgaagagag |
31432486 |
T |
|
| Q |
101 |
aacagggtggtgaaaaactctggagtgaacaatcgccaaaagtggtaatgtacgtctagcaacaacaaagatacacatgctttttaacataaaaactacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31432485 |
aacagggtggtgaaaaactctggagtgaacaatcgccaaaagtggtaatgtacgtctagcaacaacaaagatacacatgctttttaacataaaaactacg |
31432386 |
T |
|
| Q |
201 |
gttttaaaagtagaactaagtgagaacctatagacctttgatattaacccatacatcatgatttcatttcatttataattattttactcaatatttccat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31432385 |
gttttaaaagtagaactaagtgagaacctatagacctttgatattaacccatacatcatgatttcatttcatttataattattttactcaatatttccat |
31432286 |
T |
|
| Q |
301 |
atcattcagcaatgaactcaaattatcaatattaaaaagtcactacttgtcccagttggttaaatatatgataaataaagcaacattataagctgcacta |
400 |
Q |
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| T |
31432285 |
atcattcagcaatgaactcaaattatcaatattaaaaagtcactacttgtcccagctggttaaatatatgataaataaagcaacattataagctgcacta |
31432186 |
T |
|
| Q |
401 |
gcccta |
406 |
Q |
| |
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|||||| |
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| T |
31432185 |
gcccta |
31432180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 9 - 393
Target Start/End: Complemental strand, 31431419 - 31431037
Alignment:
| Q |
9 |
aagagcacaagttcaattatgtttaccta-tagatattggttaggacatgtggattaaaagtgactatgacattgcttactatatgaagagagaacaggg |
107 |
Q |
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|||||| ||||||||||||||||| || | || |||||| ||| |||||||||||||||||| || |||| |||||||||||||||| || || |
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| T |
31431419 |
aagagctcaagttcaattatgtttcagtagttgacattggtctggatatgtggattaaaagtgacattgtcattatttactatatgaagaga--accagg |
31431322 |
T |
|
| Q |
108 |
tggtgaaaaactctggagtgaacaatcgccaaaagtggtaatgtacgtctagcaac--aacaaagatacacatgctttttaacataaaaactacggtttt |
205 |
Q |
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|| | |||||||||||||||||||| || ||||||| | ||||| ||||| | |||||||| || ||||||||||||||||| |||||| |||| |
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| T |
31431321 |
tgat-aaaaactctggagtgaacaaacgtcaaaagtagcaatgtgagtctatataagaaacaaagaaacgcatgctttttaacataagaactacagttt- |
31431224 |
T |
|
| Q |
206 |
aaaagtagaactaagtgagaacctatagacctttgatattaacccatacatcatgatttcatttcatttataattattttactcaatatttccata---t |
302 |
Q |
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| T |
31431223 |
aaaagcagaactgaccgagaacctatattccatcgatataaccacgtacatc-----ttcatttcagttttaattattttactcgatatttccataagct |
31431129 |
T |
|
| Q |
303 |
cattcagcaatgaactcaaattatcaatatt-aaaaagtcactacttgtcccagttggttaaatatatgataaataaagcaacattataagc |
393 |
Q |
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|||||||||||||| |||||||||||||||| ||||||||| ||| | || || |||| |||||| ||||||||||||||||||||||||| |
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| T |
31431128 |
cattcagcaatgaattcaaattatcaatattgaaaaagtcaatacacgccctagctggtcaaatatttgataaataaagcaacattataagc |
31431037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 393
Target Start/End: Original strand, 37549365 - 37549440
Alignment:
| Q |
318 |
tcaaattatcaatattaaaaagtcactacttgtcccagttggttaaatatatgataaataaagcaacattataagc |
393 |
Q |
| |
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||||||||||||| || |||||||||||| |||||||| | |||||| |||||||||||||||| ||||||| |
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| T |
37549365 |
tcaaattatcaatgtttaaaagtcactacacaccccagttgatcaaatatttgataaataaagcaacggtataagc |
37549440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 393
Target Start/End: Original strand, 41282798 - 41282874
Alignment:
| Q |
318 |
tcaaattatcaatatt-aaaaagtcactacttgtcccagttggttaaatatatgataaataaagcaacattataagc |
393 |
Q |
| |
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||||||||||||| || ||||||||||||| ||||| |||| |||||| |||||||||||||||| ||||||| |
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| T |
41282798 |
tcaaattatcaatgttgaaaaagtcactacacaacccagctggtcaaatatttgataaataaagcaacgctataagc |
41282874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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